New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1333453	45 (0.800)	4 (0.070)	4/250	NT	9.1%	intergenic (+1034/‑222)	PP_1157/PP_1159	acetolactate synthase/membrane protein
	?	NC_002947	= 1333518	36 (0.660)					intergenic (+1099/‑157)	PP_1157/PP_1159	acetolactate synthase/membrane protein

ACCATGACGGCAGCGCATGTCAACAACGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCACCCTTGGCTATCGCTTGCATGCACCTATGCCACGTTGAG  >  NC_002947/1333374‑1333665                                                                                                                                                 |                                                                                                                                                     aCCATGACGGCAGCGCATGTCAACAACGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGag                                                                                                                                                    >  4:284675‑M2/1‑145 (MQ=255)      gACGGCAGCGCATGTCAACAACGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGatca                                                                                                                                             >  5:159886/1‑149 (MQ=255)                 aTGTCAACAACGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGAt                                                                                                                                  >  8:61580/1‑149 (MQ=255)                  tGTCAACAACGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATg                                                                                                                                 <  3:311679/149‑1 (MQ=255)                    tCAACAACGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTc                                                                                                                               >  8:340856/1‑149 (MQ=255)                      aacaacGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGa                                                                                                                             >  1:82323/1‑149 (MQ=255)                      aacaacGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGa                                                                                                                             >  5:96659/1‑149 (MQ=255)                        caacGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGAtt                                                                                                                           >  2:179820/1‑149 (MQ=255)                         aacGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGAttt                                                                                                                          <  3:330704/149‑1 (MQ=255)                          acGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTg                                                                                                                         <  6:96659/149‑1 (MQ=255)                           cGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGa                                                                                                                        <  8:44343/149‑1 (MQ=255)                           cGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGa                                                                                                                        <  2:307772/149‑1 (MQ=255)                                   tCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCa                                                                                                                >  8:280529/1‑149 (MQ=255)                                   tCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCa                                                                                                                >  4:197390/1‑149 (MQ=255)                                     gccgccgcGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACg                                                                                                              >  8:331025/1‑149 (MQ=255)                                        gccgcGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTc                                                                                                           <  4:74799/149‑1 (MQ=255)                                         ccgcGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCg                                                                                                          >  6:279161/1‑149 (MQ=255)                                           gcgAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGt                                                                                                                   <  2:272978/138‑1 (MQ=255)                                           gcgAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGt                                                                                                                   >  1:272978/1‑138 (MQ=255)                                                ccGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGa                                                                                                   >  2:263638/1‑149 (MQ=255)                                                    gtCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTg                                                                                               <  7:331025/149‑1 (MQ=255)                                                        gCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAAc                                                                                           <  5:279161/149‑1 (MQ=255)                                                                 ggggcgggCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAAc                                                                                  <  7:280529/149‑1 (MQ=255)                                                                    gcgggcgCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGAc                                                                               <  3:185060/149‑1 (MQ=255)                                                                       ggcgCGTCCGGGGCCGCTCGCGGAACGCCGGTACCACTGCCTGGCCGCTCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGGCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTg                                                                            <  4:215180/149‑1 (MQ=255)                                                                         cgcTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGcc                                                                          <  6:337479/149‑1 (MQ=255)                                                                          gcTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGaggaagcgcccgccccgctcgctgccgacacggttcgcggcggcgatataaacgttgttgacatgcgctgccgtcat                                                                         <  1:218792‑M2/149‑78 (MQ=255)                                                                            ttCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGaggaagcgcccgccccgctcgctgccgacacggttcgcggcggcgatataaacgttgttgacatgcgctgccgtcatgg                                                                       <  6:237299‑M2/149‑80 (MQ=255)                                                                              ccTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAag‑a                                                                     <  3:197390/148‑1 (MQ=255)                                                                                tGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGAc                                                                  >  2:235278/1‑149 (MQ=255)                                                                                  ggCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCg                                                                <  6:159886/149‑1 (MQ=255)                                                                                                    ggTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGaggaagcgcccgccccgctcgctgccgacacggttcgcggcggcgatataaacgttgttgacatgcgctgccgtcatggtcaggtacgaggccatgcagcgcc                                               >  2:218792‑M2/1‑46 (MQ=255)                                                                                                      tACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGaggaagcgcccgccccgctcgctgccgacacggttcgcggcggcgatataaacgttgttgacatgcgctgccgtcatggtcaggtacgaggccatgcagcgccct                                             >  5:237299‑M2/1‑44 (MQ=255)                                                                                                        ccAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAAGAGATCATCTACGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGt                                           >  1:250923/1‑148 (MQ=255)                                                                                                          aaTGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCAc                                        >  1:39067/1‑149 (MQ=255)                                                                                                              gctggcCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCACCCtt                                    <  7:61580/149‑1 (MQ=255)                                                                                                                tggcCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAGCAGACCGGCGCACCGACCTCTACGATGTCACCCTTg                                   <  1:235278/149‑1 (MQ=255)                                                                                                                  gcCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCACCCTTgg                                  <  1:263638/147‑1 (MQ=255)                                                                                                                                tGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCACCCTTGGCTATCGCTtgcatgca                  <  7:340856/149‑1 (MQ=255)                                                                                                                                       tGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCCCCCTTGGCTATCGCTTGCATGCACCTATGc           >  5:219026/1‑149 (MQ=255)                                                                                                                                         cAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCACCCTTGGCTATCGCTTGCATGCACCTATGCCa         >  7:24111/1‑149 (MQ=255)                                                                                                                                          aGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCACCCTTGGCTATCGCTTGCATGCACCTATGCCAc        <  2:43912/149‑1 (MQ=255)                                                                                                                                                cGAGGAGATCATCTACGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCACCCTTGGCTATCGCCTGCATGCACCTATGCCACGTTgag  <  2:250923/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     ACCATGACGGCAGCGCATGTCAACAACGTTTATATCGCCGCCGCGAACCGTGTCGGCAGCGAGCGGGGCGGGCGCTTCCTGGGCTGCTCGCTGATCGCCGGTACCAATGGCTGGCCGATCGGCGAGGTGGGCAGTGCAGAAGCCGAGGAGATCATCTATGCCGATGTCGATTTGAGCAGTGCACGCTCGGCACCGATCTGGAACAGCCTCAACGACCTGCCAAG‑AGACCGGCGCACCGACCTCTACGATGTCACCCTTGGCTATCGCTTGCATGCACCTATGCCACGTTGAG  >  NC_002947/1333374‑1333665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.