New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1494006 =	39 (0.690)	4 (0.070)	4/246	NT	10.4%	coding (865/2277 nt)	PP_1306	Pyocin S‑type killer domain‑containing protein
	?	NC_002947	1494037 =	32 (0.590)					coding (834/2277 nt)	PP_1306	Pyocin S‑type killer domain‑containing protein

GCCAGCCCGGCGCAACCGTTGCTCATCTACAAGGTGCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGCTCTGTGTGGATCTGCGCTGTTCTACGCGCAATCACCTG  >  NC_002947/1493893‑1494183                                                                                                                                                 |                                                                                                                                                   gCCAGCCCGGCGCAACCGTTGCTCATCTACAAGGTGCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGc                                                                                                                                                  >  4:47647/1‑147 (MQ=255)     gCCCGGCGCAACCGTTGCTCATCTACAAGGTGCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCaggta                                                                                                                                            <  2:178790/149‑1 (MQ=255)      cccGGCGCAACCGTTGCTCATCTACAAGGAGCAAAAGCCCTTCACGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCaggtag                                                                                                                                           <  6:6304/149‑1 (MQ=255)                ccGTTGCTCATCTACAAGGTGCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAgg                                                                                                                                 <  2:96455/149‑1 (MQ=255)                       tCATCTACAAGGTGCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGa                                                                                                                           >  5:236744/1‑148 (MQ=255)                         aTCTACAAGGTGCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGAc                                                                                                                          >  7:196937/1‑147 (MQ=255)                             aCAAGGTGCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAagcgt                                                                                                                    <  4:340560/149‑1 (MQ=255)                              cAAGGTGCAAAAGCACTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCCCGCGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAagagt                                                                                                                    >  8:71534/1‑148 (MQ=255)                                 gggtcAACAGCCCTTCAAGTTGTGGTTTCTACAGGGGGCTGTGGATGCGCGGGTTTTGATCTTGATAGGGCGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAagcgtgagc                                                                                                                <  4:140633/145‑1 (MQ=255)                                 ggTGCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAagcgtgagc                                                                                                                <  3:47647/149‑1 (MQ=255)                                    gCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGttt                                                                                                                              <  8:40431/132‑1 (MQ=255)                                    gCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGttt                                                                                                                              >  7:40431/1‑132 (MQ=255)                                            ccTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAagcgtgagcgtg                                                                                                             >  6:7788/1‑141 (MQ=255)                                            ccTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAagcgtgagcgtg                                                                                                             <  5:7788/141‑1 (MQ=255)                                                       tgGGTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGa                                                                                           <  6:188308/148‑1 (MQ=255)                                                         gTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGAcc                                                                                         <  5:37811/148‑1 (MQ=255)                                                                tcattgacgacacgctcacgcttgtccaaaccttcagtacctacctggcaACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGcc                                                                                                                                                 <  7:71667‑M1/35‑1 (MQ=255)                                                                tcattgacgacacgctcacgcttgtccaaaccttcagtacctacctggcaACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGcc                                                                                                                                                 >  8:71667‑M1/51‑85 (MQ=255)                                                                  gggggCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGc                                                                               <  6:236744/149‑1 (MQ=255)                                                                    gggCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTg                                                                             <  1:247015/149‑1 (MQ=255)                                                                          ttGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGAc                                                                       >  8:130539/1‑149 (MQ=255)                                                                             aTGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGtt                                                                    <  8:196937/149‑1 (MQ=255)                                                                                 gcgGGTTTTGATCTTGATAGGGGGGAATTTACGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTggg                                                                 >  1:33197/1‑148 (MQ=255)                                                                                     gTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGTCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTaaa                                                             >  1:270447/1‑148 (MQ=255)                                                                                              ttGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAAt                                                   >  3:299714/1‑149 (MQ=255)                                                                                                gATAGGGGGCAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAAt                                                   <  1:110764/147‑1 (MQ=255)                                                                                                            tttGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGctct                                     >  2:217100/1‑149 (MQ=255)                                                                                                            tttGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGctct                                     >  6:271007/1‑149 (MQ=255)                                                                                                              ggcaactgctgccgccttggtgcaggccaagcagtTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGa                                                                                                   >  8:71667‑M2/36‑85 (MQ=255)                                                                                                              ggcaactgctgccgccttggtgcaggccaagcagtTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGa                                                                                                   <  7:71667‑M2/50‑1 (MQ=255)                                                                                                                      ctgccgccttggtgcaggccaagcagtTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAg                                                                          >  4:229902‑M2/28‑102 (MQ=255)                                                                                                                      ctgccgccttggtgcaggccaagcagtTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAg                                                                          <  3:229902‑M2/75‑1 (MQ=255)                                                                                                                         ggCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGCTCTGTGTGGATCTgcg                        >  3:36551/1‑149 (MQ=255)                                                                                                                          gCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGCTCTGTGTGGATCTgcg                        <  7:130539/148‑1 (MQ=255)                                                                                                                            cTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGCTCTGTGTGGATCTGCGCTg                     >  4:348228/1‑149 (MQ=255)                                                                                                                             tGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAgg                                                                         >  2:99786/1‑96 (MQ=255)                                                                                                                             tGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAgg                                                                         <  1:99786/96‑1 (MQ=255)                                                                                                                                  cAAGGCGGAAGCAGTTGCCAGGTAGGTACTGAAGTTTTGGACAAGCGTGAGCGTGTCGTCAATGACGTTTTGACCCAGATCATGCTGAAGGACGTGGGTTAAACAATAGAAAGGTATTTGTCGCTATGTGTGTATCTGCGCGGTTCt                 >  2:28721/1‑147 (MQ=255)                                                                                                                                   aaGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGCTCTGTGTGGATCTGCGCTGTTCTAcg              <  3:348228/149‑1 (MQ=255)                                                                                                                                              agtTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGCTCTGTGTGGATCTGCGCTGTTCTACGCGCAATCACCt   <  2:33197‑M2/146‑1 (MQ=255)                                                                                                                                              agtTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGCTCTGTGTGGATCTGCGCTGTTCTACGCGCAATCACCt   <  2:270447‑M2/146‑1 (MQ=255)                                                                                                                                                tTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGCTCTGTGTGGATCTGCGCTGTTCTACGCGCAATCACCTg  >  3:248309‑M2/2‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                   GCCAGCCCGGCGCAACCGTTGCTCATCTACAAGGTGCAAAAGCCCTTCAAGTTGTGGTTTCGACAGGGGGCTGTTGATGCGCGGGTTTTGATCTTGATAGGGGGGAATTTGCGACTGCTTGGCCTGCACCAAGGCGGCAGCAGTTGCCAGGTAGGTACTGAAGGTTTGGACAAGCGTGAGCGTGTCGTCAATGACGGTTTGACCCAGCTCATGCTGAAGGACGTTGGGTAAACAATCGAAATGTATTTGTCGCTCTGTGTGGATCTGCGCTGTTCTACGCGCAATCACCTG  >  NC_002947/1493893‑1494183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.