| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1825594 | 57 (1.010) | 4 (0.070) | 4/250 | NT | 6.9% | coding (181/1092 nt) | PP_1627 | hypothetical protein |
| ? | NC_002947 | = 1825621 | 53 (0.970) | coding (208/1092 nt) | PP_1627 | hypothetical protein | |||||
CCTCCTTTATGGCGAGCGCCGGATCTATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGACCGTGTTCATCGATACCGATACGGTATT > NC_002947/1825485‑1825766 | cctcctTTATGGCGAGCGCCGGATCTATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGaa < 7:120635/145‑1 (MQ=255)cctcctTTATGGCGAGCGCCGGATCTATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGa > 1:101544/1‑149 (MQ=255) ctcctTTATGGCGAGCGCCGGATCTATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGAt > 8:338093/1‑149 (MQ=255) tcctTTATGGCGAGCGCCGGATCTATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGa > 4:135978/1‑147 (MQ=255) tcctTTATGGCGAGCGCCGGATCTATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGa < 3:135978/147‑1 (MQ=255) ttATGGCGAGCGCCGGATCTATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCAc > 5:151825/1‑149 (MQ=255) cGGATCTATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCTGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGAc < 5:154913/149‑1 (MQ=255) tATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCAACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTg > 6:157855/1‑147 (MQ=255) tCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCtt < 6:354558/144‑1 (MQ=255) tCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTg < 5:180947/145‑1 (MQ=255) tCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCa < 6:130200/147‑1 (MQ=255) tCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAgg > 7:312017/1‑149 (MQ=255) aGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGcc > 7:318521/1‑149 (MQ=255) gAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTggg < 6:160054/148‑1 (MQ=255) gAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTgg < 7:338093/147‑1 (MQ=255) gCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCgg > 5:50147/1‑149 (MQ=255) cAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGc < 3:56794/149‑1 (MQ=255) cTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGAtgg > 2:205027/1‑149 (MQ=255) tCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTa > 4:8692/1‑148 (MQ=255) cTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGATGGCGGCTacac < 1:205027/149‑1 (MQ=255) cTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTacac < 3:141320/149‑1 (MQ=255) cTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTaca < 3:240295/148‑1 (MQ=255) tCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACAcc > 5:160435/1‑149 (MQ=255) tCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACAcc > 1:297343/1‑149 (MQ=255) ccGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCAt < 1:315122/149‑1 (MQ=255) ccGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTacac < 1:134002/135‑1 (MQ=255) ccGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTacac > 2:134002/1‑135 (MQ=255) ccGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAgg > 6:131261/1‑149 (MQ=255) ttGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCt < 6:50147/149‑1 (MQ=255) cAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTgc < 8:179183/148‑1 (MQ=255) ggcggcTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCa < 2:101544/149‑1 (MQ=255) gcggcTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGAcggcgg < 4:249531/119‑1 (MQ=255) gcggcTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGAcggcgg > 3:249531/1‑119 (MQ=255) cggcTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCAtt < 5:157855/149‑1 (MQ=255) gcTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGTGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGc > 7:34490/1‑149 (MQ=255) gcTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGc > 3:82644/1‑149 (MQ=255) tGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAATGTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGcc > 1:288030/1‑149 (MQ=255) cGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGTGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCggg < 8:34490/149‑1 (MQ=255) gTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCggg > 1:242291/1‑147 (MQ=255) gATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGt > 4:239196/1‑149 (MQ=255) tCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTgg < 3:8692/149‑1 (MQ=255) cgcgTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTggg < 4:83351/148‑1 (MQ=255) cgcgTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGc < 5:131261/149‑1 (MQ=255) cgcgTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGc < 3:239196/149‑1 (MQ=255) cgTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCACTGCCCGGCCTGGGCAATggcgca < 3:65425/149‑5 (MQ=255) gTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGCCGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGa > 1:252007/1‑149 (MQ=255) gTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGa < 2:288030/149‑1 (MQ=255) ttACCGACCAGCCACAGGCTTTTGCCGGCTGGCcggtaagcacgcggatcaccggcagctcagccgccttgcaacgggccagggcggtgaggatgc > 7:201473‑M2/1‑33 (MQ=255) ttACCGACCAGCCACAGGCTTTTGCCGGCTGGCcggtaagcacgcggatcaccggcagctcagccgccttgcaacgggccagggcggtgaggatgc < 8:201473‑M2/96‑64 (MQ=255) tACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGa > 7:143464/1‑149 (MQ=255) cGACCAGCCACAGGCTTTTGCCGGCTGGCcggtaagcacgcggatcaccggcagctcagccgccttgcaacgggccagggcggtgaggatgctgag < 4:333701‑M2/96‑68 (MQ=255) cGACCAGCCACAGGCTTTTGCCGGCTGGCcggtaagcacgcggatcaccggcagctcagccgccttgcaacgggccagggcggtgaggatgctgag > 3:333701‑M2/1‑29 (MQ=255) ccAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGACCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGACCgtgt < 2:297343/149‑1 (MQ=255) cacaGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGACCGTGTTCATc < 2:242291/149‑1 (MQ=255) ttttGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTggg < 1:101006/122‑1 (MQ=255) ttttGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTggg > 2:101006/1‑122 (MQ=255) ttttGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGACCGTGTTCATcgatacc > 8:36989/1‑148 (MQ=255) ccGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGACCGTGTTCATCGATACCGATACg < 8:318521/149‑1 (MQ=255) gCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGACCGTGTTCATc < 8:263745/130‑1 (MQ=255) gCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGACCGTGTTCATc > 7:263745/1‑130 (MQ=255) gCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGACCGTGTTCATCGATACCGATACGGTAtt < 7:36989/147‑1 (MQ=255) | CCTCCTTTATGGCGAGCGCCGGATCTATCAGCTGGAGGCAAAACTCAGCATCCTCACCGCCCTGGCCCGTTGCAAGGCGGCTGAGCTGCCGGTGATCCGCGTGCTTACCGACCAGCCACAGGCTTTTGCCGGCTGGCCGGTGGAA‑GTGATCGCACTGGACGAGCAGACCTTGCAGGCCTGGGCCGGCGACGGCGGCTACACCCATCGGCGCAAGGCCTGCGCCATTGCCCAGGCCGGGCAGTGGGCGGACAAGACCGTGTTCATCGATACCGATACGGTATT > NC_002947/1825485‑1825766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |