New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2698379 =	38 (0.670)	3 (0.050)	3/250	NT	7.8%	intergenic (‑83/+59)	PP_2364/PP_2365	hypothetical protein/AraC family transcriptional regulator
	?	NC_002947	2698420 =	34 (0.620)					intergenic (‑124/+18)	PP_2364/PP_2365	hypothetical protein/AraC family transcriptional regulator

AGGGGGGACAGCGTCACGGTCATGTGCCGGGCTCCTTTGCGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATCGATGATTCGCTCGCCCAAGG  >  NC_002947/2698274‑2698553                                                                                                                                                    |                                                                                                                                      aGGGGGGACAGCGTCACGGTCATGTGCCGGGCTCCTTTGCGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCaaa                                                                                                                                     >  1:313407/1‑149 (MQ=255)   gggccttgggctatgacagcccaagtgccttcgccagcatgttcaagcgccagttcggtaccacgcccagtcagttcttcagataacctgaagtccacgcatttGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAAt                                                                                                                                    >  5:364155‑M1/105‑149 (MQ=255)     gccttgggctatgacagcccaagtgccttcgccagcatgttcaagcgccagttcggtaccacgcccagtcagttcttcagataacctgaagtccacgcatttGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGc                                                                                                                                  >  5:190103‑M1/103‑149 (MQ=255)              tCACGGTCATGTGCCGGGCTCCTTTGCGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCa                                                                                                                        <  2:313407/149‑1 (MQ=255)                  ggTCATGTGCCGGGCTCCTTTGCGGGCATTGTTGTAGGGGTACTGTATAGCGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGt                                                                                                                     >  1:265811/1‑149 (MQ=255)                    tCATGTGCCGGGCTCCTTTGCGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTAt                                                                                                                  >  4:198941/1‑149 (MQ=255)                      aTGTGCCGGGCTCCTTTGCGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATc                                                                                                                 <  5:151393/148‑1 (MQ=255)                         tgCCGGGCTCCTTTGCGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTg                                                                                                               >  4:94971/1‑147 (MQ=255)                                       gCGGTCATTGTTGTAGGTGGACTGTATA‑CGGGTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCg                                                                                               <  4:62146/149‑1 (MQ=255)                                       gCGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTggg                                                                                                 >  6:32625/1‑147 (MQ=255)                                       gCGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTggg                                                                                                 <  5:32625/147‑1 (MQ=255)                                        cGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGt                                                                                              <  2:7784/149‑1 (MQ=255)                                         gggCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTg                                                                                             >  2:185380/1‑149 (MQ=255)                                                gttgtAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCaa                                                                                                                                      >  5:111937/1‑101 (MQ=255)                                                gttgtAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCaa                                                                                                                                      <  6:111937/101‑1 (MQ=255)                                                             tGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGaa                                                                         >  2:320005/1‑149 (MQ=255)                                                               tata‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACa                                                                       >  2:290198/1‑149 (MQ=255)                                                                  a‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTgaa                                                                                                             <  7:285926/108‑1 (MQ=255)                                                                  a‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTgaa                                                                                                             >  8:285926/1‑108 (MQ=255)                                                                  a‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTg                                                                                             >  4:335261/1‑124 (MQ=255)                                                                  a‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTg                                                                                             <  3:335261/124‑1 (MQ=255)                                                                      gCTTGGCTGGGATGCTGTGCAAGGACAGGCAGGGCGAGCCGTCAGGGGACATCGCTCATGCGGAGACCGAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTgg                                                                 <  1:296948/149‑1 (MQ=255)                                                                                        gCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGt                                               >  2:277001/1‑149 (MQ=255)                                                                                         cAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGGACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGt                                               >  6:333155/1‑148 (MQ=255)                                                                                         cAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTc                                              <  1:320005/149‑1 (MQ=255)                                                                                            gcaCAGGCAGGGCGAGCCGTCAGCGGACATCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCTCGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTAcc                                                                                        <  8:324627/102‑1 (MQ=255)                                                                                            gAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCa                                             >  5:104222/1‑147 (MQ=255)                                                                                            gAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCa                                             >  5:44462/1‑147 (MQ=255)                                                                                            gAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATa                                           <  6:104222/149‑1 (MQ=255)                                                                                            gAACAGGCAGAGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAATAACTGACTGGGCGTGGTACAGAACTGGCGCTTGAACATGCTCGCGAAGGCACTTGGGCTGTCa                                             >  6:342045/1‑147 (MQ=255)                                                                                              aCAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGc                                         <  3:94971/149‑1 (MQ=255)                                                                                                    aggGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGATGTCATAGCCCAAgg                                   >  8:74010/1‑149 (MQ=255)                                                                                                     gcatttgccggcactggcccgccgcatacgggctgtccgctgacggcAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGc                                  >  5:190103‑M2/48‑149 (MQ=255)                                                                                                       atttgccggcactggcccgccgcatacgggctgtccgctgacggcAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGccc                                >  5:364155‑M2/46‑149 (MQ=255)                                                                                                           gccggcactggcccgccgcatacgggctgtccgctgacggcAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGc                            >  3:177764‑M2/42‑149 (MQ=255)                                                                                                            CCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGcc                           >  3:198941‑M1/1‑149 (MQ=255)                                                                                                                 aGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATc                      <  1:185380/149‑1 (MQ=255)                                                                                                                        aGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATCGATGAtt               <  1:277001/149‑1 (MQ=255)                                                                                                                          cccGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCtt                                                                            >  2:300374/1‑86 (MQ=255)                                                                                                                               aTGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATCGATGATtcgctcgc        >  6:202764/1‑149 (MQ=255)                                                                                                                                  cggcggGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGGACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATCGATGATTCGCTCGccc      <  5:333155/148‑1 (MQ=255)                                                                                                                                     cggGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATCGATGATTCGCTCGCCCAAgg  >  2:279434/1‑149 (MQ=255)                                                                                                                                     cggGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATCGATGATTCGCTCGCCCAAgg  <  1:222119/149‑1 (MQ=255)                                                                                                                                                  gcAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATCgatga                 >  4:158827‑M2/3‑121 (MQ=255)                                                                                                                                                  gcAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATCgatga                 <  3:158827‑M2/119‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                      AGGGGGGACAGCGTCACGGTCATGTGCCGGGCTCCTTTGCGGGCATTGTTGTAGGGGTACTGTATA‑CGGCTTGGCGGGGATGCTGTGCAAGAACAGGCAGGGCGAGCCGTCAGCGGACAGCCCGTATGCGGCGGGCCAGTGCCGGCAAATGCGTGGACTTCAGGTTATCTGAAGAACTGACTGGGCGTGGTACCGAACTGGCGCTTGAACATGCTGGCGAAGGCACTTGGGCTGTCATAGCCCAAGGCCCCCGCCACATCGATGATTCGCTCGCCCAAGG  >  NC_002947/2698274‑2698553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.