New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3146296 =	51 (0.900)	3 (0.060)	3/246	NT	6.1%	coding (719/987 nt)	PP_2761	ribose ABC transporter permease
	?	NC_002947	3146335 =	44 (0.820)					coding (758/987 nt)	PP_2761	ribose ABC transporter permease

TTGGCAGCCAGCCACTGGTGGCGCGTTATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACGGCCAACGGTCTGCTGCTGATCGGCTGGAATTTC  >  NC_002947/3146188‑3146480                                                                                                                                                    |                                                                                                                                                  cgttgagaaatagcacaccgagcagtgtaccgggtacgttgacccggttgtgcaggctcaacgtggcaccgatgaagaccgcaccgatggcattcatcaggaacgcatTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCaa                                                                                                                                                   >  7:273196‑M1/109‑148 (MQ=255)   ggCAGCCAGCCACTGGTGGCGCGTTATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAAt                                                                                                                                                  <  5:341162/147‑1 (MQ=255)    gCAGCCAGCCACTGGTGGCGCGTTATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGcc                                                                                                                                               >  1:348606/1‑149 (MQ=255)              aCTGGTGGCGCGTTATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCtgatg                                                                                                                                      >  2:91356/1‑148 (MQ=255)                  gtggCGCGTTATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAAt                                                                                                                                   <  6:304634/147‑1 (MQ=255)                  gtggCGCGTTATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATg                                                                                                                                  <  1:91356/148‑1 (MQ=255)                     gcgcGTTATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCAt                                                                                                                              <  5:52327/149‑1 (MQ=255)                     gcgcGTTATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCAt                                                                                                                              <  8:10441/149‑1 (MQ=255)                       gcgTTATTCGGGACTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCg                                                                                                                            >  3:286966/1‑149 (MQ=255)                       gcgTTATTCGCGCCTGGCGCAGCGACGTATCGCTGCCCTGGGGTGCATCGCCAGGGCCTTTGCCACCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCg                                                                                                                            <  8:47592/149‑1 (MQ=255)                          ttATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTg                                                                                                                         >  3:90120/1‑149 (MQ=255)                            aTTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCg                                                                                                                       >  8:305208/1‑149 (MQ=255)                                gggCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTc                                                                                                                    <  7:111743/148‑1 (MQ=255)                                gggCCTAGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGCACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCt                                                                                                                   >  6:205219/1‑149 (MQ=255)                                       gcgcAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCg                                                                                                             <  8:20129/148‑1 (MQ=255)                                       gcgcAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCg                                                                                                             <  3:222828/148‑1 (MQ=255)                                       gcgcAGCGACGTATCGCTG‑CCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGt                                                                                                           <  7:290470/149‑1 (MQ=255)                                           aGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGcc                                                                                                        <  3:51454/149‑1 (MQ=255)                                                 gTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGtt                                                                                                   >  2:275703/1‑148 (MQ=255)                                                    tCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGc                                                                                               >  1:77916/1‑149 (MQ=255)                                                    tCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGc                                                                                               <  3:57494/149‑1 (MQ=255)                                                          cccTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGc                                                                                           <  1:275703/147‑1 (MQ=255)                                                            cTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACaa                                                                                       >  6:161104/1‑149 (MQ=255)                                                             tGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCATGGTGACCGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAAc                                                                                      >  6:273877/1‑149 (MQ=255)                                                              ggTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAAc                                                                                      >  4:196743/1‑148 (MQ=255)                                                              ggTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAAc                                                                                      <  3:196743/148‑1 (MQ=255)                                                               gtgtTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCAt                                                                                                                              <  4:219001/107‑1 (MQ=255)                                                               gtgtTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCAt                                                                                                                              >  3:219001/1‑107 (MQ=255)                                                                              gCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCg                                                                      <  2:348606/148‑1 (MQ=255)                                                                                 tttGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTa                                                                   >  5:250227/1‑148 (MQ=255)                                                                                 cccgCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAAc                                                                             <  1:81512/135‑1 (MQ=255)                                                                                 cccgCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAAc                                                                             >  2:81512/4‑138 (MQ=255)                                                                                  ttGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTaca                                                                 >  8:213534/1‑149 (MQ=255)                                                                                    gCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTacac                                                                <  5:161104/148‑1 (MQ=255)                                                                                         cgcgcTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTacaccgagca                                                          <  4:286966/149‑7 (MQ=255)                                                                                              tGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGtgtg                                                     >  7:218541/1‑149 (MQ=255)                                                                                                    gCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTAttt                                               <  4:90120/149‑1 (MQ=255)                                                                                                    gCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTAttt                                               >  6:281361/1‑149 (MQ=255)                                                                                                         ctgctgCCGGCCATGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCa                                           <  5:273877/148‑1 (MQ=255)                                                                                                            ttgccggacatcggcgcgtaggcgttcaccgtggccggcaATGCGTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACg                                        >  7:273196‑M2/41‑148 (MQ=255)                                                                                                             TGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGt                                       <  4:289036‑M1/148‑1 (MQ=255)                                                                                                                 ggacatcggcgcgtaggcgttcaccgtggccggcaATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTAttt                                               >  6:228885‑M2/36‑136 (MQ=255)                                                                                                                 ggacatcggcgcgtaggcgttcaccgtggccggcaATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTAttt                                               <  5:228885‑M2/101‑1 (MQ=255)                                                                                                                  GCCACGGTGAACACCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACGGc                                 <  2:65316‑M1/149‑1 (MQ=255)                                                                                                                   ccACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACg                                   >  7:132791/1‑146 (MQ=255)                                                                                                                   ccACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACg                                   <  8:132791/146‑1 (MQ=255)                                                                                                                      cGGTGAACGCCTACTCGGCGCTGGCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACGGCCAAc                             <  6:250227/149‑1 (MQ=255)                                                                                                                         tGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGgtgt                                                      >  2:15099/1‑121 (MQ=255)                                                                                                                         tGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGgtgt                                                      <  1:15099/121‑1 (MQ=255)                                                                                                                           aaCGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGCAACGGCCAACGGTc                         <  7:305208/148‑1 (MQ=255)                                                                                                                              gCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACGGCCAACGGTctgct                     >  5:3807/1‑149 (MQ=255)                                                                                                                                cTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACGGCCAACGGTctgctgc                   <  3:1816/149‑1 (MQ=255)                                                                                                                                          aTGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACGGCCAACGGTCTGCTGCTGATCGGCTg         <  1:65316/149‑1 (MQ=255)                                                                                                                                                 gcaATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACGGCCAACGGTCTGCTGCTGATCGGCTGGAATttc  >  2:110732‑M2/4‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TTGGCAGCCAGCCACTGGTGGCGCGTTATTCGGGCCTGGCGCAGCGACGTATCGCTGCCCTGGTGTTCATCGCCAGTGCCTTTGCCAGCGCGCTGGCGGGCATTCTGCTGCCGGCCACGGTGAACGCCTACGCGCCGATGTCCGGCAATGCCTTCCTGATGAATGCCATCGGTGCGGTCTTCATCGGTGCCACGTTGAGCCTGCACAACCGGGTCAACGTACCCGGTACACTGCTCGGTGTGCTATTTCTCAACGTAACGGCCAACGGTCTGCTGCTGATCGGCTGGAATTTC  >  NC_002947/3146188‑3146480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.