New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3463005	48 (0.850)	3 (0.060)	3/246	NT	6.7%	coding (1353/1929 nt)	PP_3078	ABC transporter substrate‑binding protein
	?	NC_002947	= 3463061	38 (0.700)					coding (1297/1929 nt)	PP_3078	ABC transporter substrate‑binding protein

GCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTGGAGAACACGCTTTGCTGG  >  NC_002947/3462914‑3463209                                                                                                                                                    |                                                                                                                                                     gcagcagcaGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATc                                                                                                                                                     >  3:75337‑M2/1‑148 (MQ=255)   agcagcagGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATccc                                                                                                                                                   >  3:262132‑M2/1‑146 (MQ=255)      agcagGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATccccga                                                                                                                                                >  3:194082‑M2/1‑143 (MQ=255)          ggCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCa                                                                                                                                            >  4:1008/1‑149 (MQ=255)             gTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCg                                                                                                                                         >  3:259137/1‑149 (MQ=255)               tCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGt                                                                                                                                       >  4:277486/1‑149 (MQ=255)                   ggCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGAcc                                                                                                                                   >  1:191126/1‑149 (MQ=255)                      ccGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCggg                                                                                                                                <  4:259137/149‑1 (MQ=255)                      ccGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCggg                                                                                                                                <  2:30046/149‑1 (MQ=255)                         ccTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGTCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCa                                                                                                                             <  8:7243/149‑1 (MQ=255)                                aTTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAaca                                                                                                                      >  8:62144/1‑149 (MQ=255)                                    aGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCgt                                                                                                                  <  3:1008/149‑1 (MQ=255)                                    aGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCgt                                                                                                                  <  3:314812/149‑1 (MQ=255)                                       aaCGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCgtggt                                                                                                               <  5:205772/149‑1 (MQ=255)                                        aCGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCgtggtg                                                                                                              <  3:77621/149‑1 (MQ=255)                                        aCGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCgtggt                                                                                                               >  5:307778/1‑148 (MQ=255)                                             aaCGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAaca                                                                                                          <  7:62144/148‑1 (MQ=255)                                                  cAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCgtg                                                                                                                 >  4:281077/1‑136 (MQ=255)                                                  cAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCgtg                                                                                                                 <  3:281077/136‑1 (MQ=255)                                                  cAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCa                                                                                                     >  2:87857/1‑148 (MQ=255)                                                                ggCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCcg                                                                                      >  4:291689/1‑149 (MQ=255)                                                                 gCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCcgc                                                                                     <  3:277486/149‑1 (MQ=255)                                                                    aTTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCgg                                                                                                                                 >  3:224263/1‑102 (MQ=255)                                                                    aTTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCgg                                                                                                                                 <  4:224263/102‑1 (MQ=255)                                                                       tccccgtcGGTCGCCTTCGGGGTGCCAGCCGGCCTGCTCGAGCAGGGCCAGGGCCTGCAACTGCTGATGACGTATTATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAg                                                                                <  4:257613/141‑1 (MQ=255)                                                                        aCCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAggg                                                                              >  2:340914/1‑149 (MQ=255)                                                                             gCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGa                                                                         <  3:352574/149‑1 (MQ=255)                                                                                 tCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATccccgaaggcgaccgcctggtcaatagccagggcacgccgctggcgttcacgttcctcaatggccaggcgggccttgaacg                                                                     <  6:302658‑M2/149‑82 (MQ=255)                                                                                     cTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATccccgaaggcgaccgcctggtcaatagccagggcacgccgctggcgttcacgttcctcaatggccaggcggg                                                                              >  8:312683‑M2/1‑64 (MQ=255)                                                                                     cTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATccccgaaggcgaccgcctggtcaatagccagggcacgccgctggcgttcacgttcctcaatggccaggcggg                                                                              <  7:312683‑M2/136‑73 (MQ=255)                                                                                     cTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCtt                                                                  >  6:363430/1‑148 (MQ=255)                                                                                          gggTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTc                                                            >  1:228902/1‑149 (MQ=255)                                                                                               ccAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGccc                                                        <  2:228902/148‑1 (MQ=255)                                                                                               ccAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCg                                                       >  8:304450/1‑149 (MQ=255)                                                                                                   ccGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATc                                                   >  3:195776/1‑149 (MQ=255)                                                                                                           ttCGAGGAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATc                                                   >  4:214940/1‑141 (MQ=255)                                                                                                           ttCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATc                                                   <  3:214940/141‑1 (MQ=255)                                                                                                           ttCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACt                                           >  8:7202/1‑149 (MQ=255)                                                                                                                          ggccTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACg                            <  7:304450/149‑1 (MQ=255)                                                                                                                               gCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTa                       >  4:273272/1‑149 (MQ=255)                                                                                                                                  aCTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTg                    <  5:363430/149‑1 (MQ=255)                                                                                                                                  aCTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTg                    <  1:340914/149‑1 (MQ=255)                                                                                                                                  aCTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGACGTATTg                    <  4:195776/149‑1 (MQ=255)                                                                                                                                          tGACGGATGATCCCCGAGCCATCAGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCACCGGCGTATTGGAGAacac            >  6:83923/1‑149 (MQ=255)                                                                                                                                             cGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCACAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTGGAGAACACGCt         >  7:109759/1‑149 (MQ=255)                                                                                                                                                  gatCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTGGAGAACACGCTTTGCt    <  6:307778/149‑1 (MQ=255)                                                                                                                                                    tCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGa                                      >  2:318543/1‑113 (MQ=255)                                                                                                                                                    tCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGa                                      <  1:318543/113‑1 (MQ=255)                                                                                                                                                    tCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTGGAGAACACGCTTTGCTgg  <  1:87857/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCAGCAGCAGGCGTTCAAGGCCCGCCTGGCCATTGAGGAACGTGAACGCCAGCGGCGTGCCCTGGCTATTGACCAGGCGGTCGCCTTCGGGGTGCCAGCCGGCTTGTTCGAGCAGGGCCAGGGCCTGCAACTGCTGTTGACGGATGATCCCCGAGCCATCGGTGACCGGGGCAGTGAACACCGTGGTGAACACTTCATCTGGCACTTGGCCGCGCAAGGGGGCGAGCAGCTTCAACTCGCCCGCATCCGGCAACTGGCGAGCGGCCAACGGCGTATTGGAGAACACGCTTTGCTGG  >  NC_002947/3462914‑3463209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.