New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3928339 =	36 (0.640)	9 (0.180)	8/224	NT	23.0%	intergenic (+15/‑125)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	3928420 =	29 (0.590)					intergenic (+96/‑44)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein

AATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAACGCCGACCT  >  NC_002947/3928302‑3928567                                                                                                                       |                                                                                                                                                    aaTCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAAc                                                                                                                        <  1:281126/148‑1 (MQ=255)      gtgtTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGTAGCGGGTTAACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGa                                                                                                                  <  6:186212/149‑1 (MQ=255)       tgtTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATgg                                                                                                                   >  1:262185/1‑147 (MQ=255)       tgtTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATgg                                                                                                                   <  2:262185/147‑1 (MQ=255)         ttGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTAGCGGGTAAAACCGCTACAACACCACGTATAACATGCCCTGTAAGAGCGGGTTAACCCGCGAAGAGGCCCGCACAGGCAAAAAAAAAAAAACAAAAAAAAACATTGatc                                                                                                                >  2:291450/1‑146 (MQ=255)               aaGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCCCGCCGAAACCAGGTATAACATGCCCTGTAGGAGCGGGGTAACCCGCGAAGAGGCCGGCCCAGGCAACAAAAAAACAACAAAAAAAACCCTGGAGCCAcccc                                                                                                          >  2:286160/1‑148 (MQ=37)                 gCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCCCATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGa                                                                                                                  <  8:167215/138‑1 (MQ=255)                 gCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATAACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGa                                                                                                                  >  7:167215/1‑138 (MQ=255)                  ctctGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGa                                                                                                      <  1:286160/149‑1 (MQ=255)                       aTCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGcac                                                                                                 >  3:250633/1‑149 (MQ=255)                          cTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGAGATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAAC‑AAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCacacac                                                                                             >  1:85019/1‑149 (MQ=255)                           tttttCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTTTCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                                                                                                  >  3:211386/1‑112 (MQ=255)                                ccTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGc                                                                                         <  5:283054/148‑1 (MQ=255)                                ccTGTACCGGCCTCTTCGCGGGTAAACCCCCGGCTACACCAGGGATGACATGCCCGGTAGGAGCGGGGTGACCCGCGAAGAGGCCGGCCCAGGCAACAAAAAAACAACCAAAAAAACCAAGGAGGAACCCCAAGAGGcacacccacccc                                                                                        >  6:308621/1‑142 (MQ=25)                                    tACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTAGCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGc                                                                                     <  3:52864/148‑1 (MQ=255)                                     aCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGGTATCACATGCCCTGTAGGCGCGGTTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGca                                                                                    <  5:308621/148‑1 (MQ=255)                                       CGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACAt                                                                                 <  4:218568‑M1/149‑1 (MQ=255)                                        GGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACAtt                                                                                >  4:250633‑M1/1‑149 (MQ=255)                                            TCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGcc                                                                            <  1:319249‑M1/149‑1 (MQ=255)                                            TCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGcc                                                                            <  6:310297‑M1/149‑1 (MQ=255)                                              TTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGcac                                                                                                 <  5:14303‑M1/126‑1 (MQ=255)                                              TTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGcac                                                                                                 >  6:14303‑M1/1‑126 (MQ=255)                                              TTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCct                                                                          <  3:309260‑M1/149‑1 (MQ=255)                                               gaGCGGGTTTACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCctg                                                                         <  6:38587‑M1/147‑1 (MQ=255)                                                   gggtgaacccgctcctacagggcatgtgatacctggtgtaggagcgggtttacccgcgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGt                                                                     >  7:164825‑M2/69‑149 (MQ=255)                                                          cccgctcctacagggcatgtgatacctggtgtaggagcgggtttacccgcgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTg                                                                               >  6:231082‑M2/62‑132 (MQ=255)                                                          cccgctcctacagggcatgtgatacctggtgtaggagcgggtttacccgcgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTg                                                                               <  5:231082‑M2/71‑1 (MQ=255)                                                           ccgctcctacagggcatgtgatacctggtgtaggagcgggtttacccgcgaagaggccggTACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAAcc                                                                <  6:1715‑M2/86‑1 (MQ=255)                                                           ccgctcctacagggcatgtgatacctggtgtaggagcgggtttacccgcgaagaggccggTACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAAcc                                                                >  5:1715‑M2/61‑146 (MQ=255)                                                           ccgctcctacagggcatgtgatacctggtgtaggagcgggtttacccgcgaagaggccggTACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGcc                                                             >  7:165465‑M2/61‑149 (MQ=255)                                                            cgctcctacagggcatgtgatacctggtgtaggagcgggtttacccgcgaagaggccggTACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGccc                                                            >  3:351316‑M2/60‑149 (MQ=255)                                                             gctcctacagggcatgtgatacctggtgtaggagcgggtttacccgcgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGtt                                                                    >  6:250952‑M2/59‑140 (MQ=255)                                                             gctcctacagggcatgtgatacctggtgtaggagcgggtttacccgcgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGtt                                                                    <  5:250952‑M2/82‑1 (MQ=255)                                                                  tACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCt                                                                                       <  6:77617/116‑1 (MQ=255)                                                                  tACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCt                                                                                       >  5:77617/1‑116 (MQ=255)                                                                       cAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCaa                                                 <  5:310297/149‑1 (MQ=255)                                                                          gTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGcc                                              >  7:85843/1‑149 (MQ=255)                                                                               acaTGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTAc                                           >  8:23363/1‑147 (MQ=255)                                                                                 aTGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAAC‑AAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCt                                      <  2:85019/149‑1 (MQ=255)                                                                                     ccTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGt                                    >  1:7922/1‑148 (MQ=255)                                                                                       tGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTAc                                  >  2:341510/1‑148 (MQ=255)                                                                                         tagtagCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGATGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACaa                                <  1:291450/148‑1 (MQ=255)                                                                                            gAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGccccc                                                          <  1:125767/119‑1 (MQ=255)                                                                                            gAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGccccc                                                          >  2:125767/1‑119 (MQ=255)                                                                                                gggTTCACCCGCTAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGAt                         <  3:283520/148‑1 (MQ=255)                                                                                                gggTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGATGTACAACCACGATg                        >  3:297505/1‑149 (MQ=255)                                                                                                  gTTCACCCGTTAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGc                      <  1:122648/149‑1 (MQ=255)                                                                                                  gTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTa                                            <  4:157939/127‑1 (MQ=255)                                                                                                  gTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTa                                            >  3:157939/1‑127 (MQ=255)                                                                                                        ccgcgaagcggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCAGACACTCGCCTGCACATTTGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCaccacc                >  7:77312‑M2/16‑149 (MQ=255)                                                                                                        ccgcgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCaccacc                >  8:26656‑M2/16‑149 (MQ=255)                                                                                                        ccgcgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCaccacc                >  2:98178‑M2/16‑149 (MQ=255)                                                                                                           cgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTc             <  4:297505‑M2/137‑1 (MQ=255)                                                                                                              agaggccggTACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAAc          <  4:351316‑M2/140‑1 (MQ=255)                                                                                                              agaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAAc          <  2:319249‑M2/140‑1 (MQ=255)                                                                                                                  gccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTaa                                                                  <  3:236509‑M2/84‑1 (MQ=255)                                                                                                                  gccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTaa                                                                  >  4:236509‑M2/6‑89 (MQ=255)                                                                                                                    cggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAACGCCGAc    <  2:7922‑M2/146‑1 (MQ=255)                                                                                                                      gCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAACGCCGACCt  >  6:290466‑M2/2‑149 (MQ=255)                                                                                                                      gCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCACCGCCAGCCACGCCTACGAGCTGTACAACCACGAACCCACCACCCTcaacgccccact  >  5:30509‑M2/2‑144 (MQ=255)                                                                                                                       |                                                                                                                                                    AATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAACGCCGACCT  >  NC_002947/3928302‑3928567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.