New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4776426	42 (0.740)	3 (0.060)	3/248	NT	6.5%	coding (2841/10413 nt)	pvdD	non‑ribosomal peptide synthetase
	?	NC_002947	= 4776460	46 (0.850)					coding (2807/10413 nt)	pvdD	non‑ribosomal peptide synthetase

GCGTGGAATGAACACCAGGTGGGTCGGCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCTTCAACTGGTGGTCGATGCGCCCCATGTACTCCAGCACA  >  NC_002947/4776315‑4776609                                                                                                                                                  |                                                                                                                                                      gCGTGGAATGAACACCAGGTGGGTCGGCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAgct                                                                                                                                                    <  4:47926‑M2/149‑4 (MQ=255)       aaTGAACACCAGGTGGGTCGGCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTg                                                                                                                                               <  3:47926/148‑1 (MQ=255)        aTGAACACCAGGTGGGTCGGCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGcc                                                                                                                                             <  8:153260/149‑1 (MQ=255)           aaCACCAGGTGGGTCGGCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGTTTGCCCAg                                                                                                                                          >  2:37433/1‑149 (MQ=255)              acCAGGTGGGTCGGCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCgg                                                                                                                                       <  8:250744/149‑1 (MQ=255)               ccAGGTGGGTCGGCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGc                                                                                                                                      >  6:155412/1‑149 (MQ=255)                     gggTCGGCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCcgtc                                                                                                                                 >  7:14330/1‑148 (MQ=255)                          ggCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCcgtcgacgtc                                                                                                                           <  7:298381/149‑1 (MQ=255)                              ccATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGAt                                                                                                                        >  7:258842/1‑148 (MQ=255)                               cATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCa                                                                                                                      >  8:263069/1‑149 (MQ=255)                                      tCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCAc                                                                                                               >  8:253754/1‑149 (MQ=255)                                         ggCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTc                                                                                                            <  8:258842/149‑1 (MQ=255)                                               gACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGcgcac                                                                                                      <  8:14330/149‑1 (MQ=255)                                                          gTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGc                                                                                           >  2:122551/1‑149 (MQ=255)                                                           tGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGTTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGcc                                                                                          <  1:37433/149‑1 (MQ=255)                                                            gggCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGccc                                                                                         >  1:357966/1‑149 (MQ=255)                                                              gCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCCGCGGCTTGCCCAGCGGCCCGTCGACGTCGCTCACGGCCACTTCGCGCACCGCACTGAAGCCCTg                                                                                       >  4:90128/1‑149 (MQ=255)                                                               ccTTGCGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGc                                                                                      <  8:151137/149‑1 (MQ=255)                                                                cTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCa                                                                                     <  5:155412/149‑1 (MQ=255)                                                                         cAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCt                                                                            >  6:63451/1‑149 (MQ=255)                                                                          aGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTc                                                                           >  7:215166/1‑149 (MQ=255)                                                                            gcgcAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGa                                                                         <  8:204891/149‑1 (MQ=255)                                                                               cAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGAtct                                                                      >  6:323938/1‑149 (MQ=255)                                                                                aGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGAtctc                                                                     >  6:109716/1‑149 (MQ=255)                                                                                  ggTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGc                                                                   <  7:253754/149‑1 (MQ=255)                                                                                    tttCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGccc                                                                 <  1:122551/149‑1 (MQ=255)                                                                                        cTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACt                                                             >  8:47317/1‑149 (MQ=255)                                                                                            aCCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGAt                                                         <  7:263069/149‑1 (MQ=255)                                                                                              cTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGAt                                                         >  1:357653/1‑147 (MQ=255)                                                                                              cTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGAt                                                         <  2:357653/147‑1 (MQ=255)                                                                                                    aTCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAAc                                                 >  6:48280/1‑149 (MQ=255)                                                                                                     tCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAgctgcaggctgatgccgaggttcaggaaaccctgcgcctggcactcaaggcccacgcattgaagtcgatgccggactacatggtgc                                                                 >  8:82969‑M2/1‑46 (MQ=255)                                                                                                       aGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACcgc                                              <  5:323938/149‑1 (MQ=255)                                                                                                       aGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACcgc                                              <  5:109716/149‑1 (MQ=255)                                                                                                        gCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACcgc                                              >  7:98562/1‑148 (MQ=255)                                                                                                         ccTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGaaa                                                  <  6:242497/143‑1 (MQ=255)                                                                                                         ccTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGaaa                                                  >  5:242497/1‑143 (MQ=255)                                                                                                         ccTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGa                                            <  7:47317/149‑1 (MQ=255)                                                                                                          cTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAgctgcaggctgatgccgaggttcaggaaaccctgcgcctggcactcaaggcccacgcattgaagtcgatgccggactacatggtgccgacccacctggtgtt                                                 <  5:191448‑M2/143‑103 (MQ=255)                                                                                                          cTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAgctgcaggctgatgccgaggttcaggaaaccctgcgcctggcactcaaggcccacgcattgaagtcgatgccggactacatggtgccgacccacctggtgtt                                                 >  6:191448‑M2/1‑41 (MQ=255)                                                                                                            gcagcaGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATc                                         >  8:209867/1‑149 (MQ=255)                                                                                                             cagcagGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCt                                        <  6:330285/149‑1 (MQ=255)                                                                                                              agcagGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCtt                                       <  5:63451/149‑1 (MQ=255)                                                                                                                   gCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATc                                                                                                                       <  1:184982/64‑1 (MQ=255)                                                                                                                   gCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATc                                                                                                                       >  2:184982/1‑64 (MQ=255)                                                                                                                         aTCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAAt                                          >  4:170462/1‑135 (MQ=255)                                                                                                                         aTCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAAt                                          <  3:170462/135‑1 (MQ=255)                                                                                                                                  cACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCTTCAACTGGTGGTCGATGCGcc                   >  6:56059/1‑149 (MQ=255)                                                                                                                                       tataGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGcc                                                                                          >  8:126964/1‑73 (MQ=255)                                                                                                                                       tataGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGcc                                                                                          <  7:126964/73‑1 (MQ=255)                                                                                                                                            ccTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCTTCAACTGGTGGTCGATGCGCCCCATGTACTc         <  7:209867/149‑1 (MQ=255)                                                                                                                                            ccTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCTTCAACTGGTGGTCGATGCGCCCCATGTACTc         >  3:25261/1‑149 (MQ=255)                                                                                                                                                ccAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCTTCAACTGGTGGTCGATGCGCCCCATGTACTCCa       <  5:56059/147‑1 (MQ=255)                                                                                                                                                ccAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCTTCAACTGGTGGTCGATGCGCCCCATGTACTCCAg      <  4:25261/148‑1 (MQ=255)                                                                                                                                                 cAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCTTCAACTGGTGGTCGATGCGCCCCATGTACTCCAGca    <  2:357966/149‑1 (MQ=255)                                                                                                                                                  aGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCTTCAACTGGT‑GTCGATGCGCCCCATGTACTCCAGcaca  <  8:98562/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      GCGTGGAATGAACACCAGGTGGGTCGGCACCATGTAGTCCGGCATCGACTTCAATGCGTGGGCCTTGAGTGCCAGGCGCAGGGTTTCCTGAACCTCGGCATCAGCCTGCAGCAGGCTGGCATCGTACGGCACGATATAGCCTGCCAGCTGCTTGCCCAGCGGCCCGTCGACGTCGATCACGGCCACTTCGCGCACCGCACCGAAGCCCTGCAGGCTGGCCTCGATCTCGCCCAACTCGATGCGGAAACCGCGAATCTTCAACTGGTGGTCGATGCGCCCCATGTACTCCAGCACA  >  NC_002947/4776315‑4776609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.