New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5414165 =	39 (0.690)	3 (0.060)	3/240	NT	7.9%	coding (5/2394 nt)	PP_4755	ferrichrome‑iron receptor
	?	NC_002947	5414243 =	34 (0.650)					intergenic (‑74/+142)	PP_4755/gabP‑V	ferrichrome‑iron receptor/gamma‑aminobutyrate permease

CCAGGCCCAACAGTGCAGCATGCAGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAA  >  NC_002947/5414100‑5414384                                                                                                                                                |                                                                                                                                              ccAGGCCCAACAGTGCAGCATGCAGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAac                                                                                                                                           <  3:225074/148‑1 (MQ=255)         aaCAGTGCAGCATGCAGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCatt                                                                                                                                   >  1:254716/1‑148 (MQ=255)          aCAGTGCAGCATGCAGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCattta                                                                                                                                 <  7:191268/149‑1 (MQ=255)            aGTGCAGCATGCAGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCatttatt                                                                                                                               <  4:415/149‑1 (MQ=255)             tcgcaggtacccgccccgctagcgcaattcattgaaaataaatgaggtgttttCTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGaaaa                                                                                                                                            <  8:134533‑M1/82‑1 (MQ=255)             tcgcaggtacccgccccgctagcgcaattcattgaaaataaatgaggtgttttCTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGaaaa                                                                                                                                            >  7:134533‑M1/54‑135 (MQ=255)                 agcaTGCAGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCaa                                                                                                                          <  5:79687/149‑1 (MQ=255)                       cAGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAAtt                                                                                                                    >  5:292349/1‑149 (MQ=255)                        aGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAAtt                                                                                                                    <  3:156318/148‑1 (MQ=255)                        aGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTg                                                                                                                   >  8:312405/1‑149 (MQ=255)                          ggCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTgcg                                                                                                                 <  2:254716/149‑1 (MQ=255)                               gACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTC‑GGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGAGCTAgcg                                                                                                           >  2:339098/1‑149 (MQ=255)                                aCTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAgcg                                                                                                           <  6:292349/149‑1 (MQ=255)                                                        cGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGt                                                                                   <  7:312405/149‑1 (MQ=255)                                                             tAAAACTCATTATCTCGCTCCTTGTCGGGGGGCGGCGGGCTGGCCTGTAATGCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCTGGTACCTGCGAGCACCTGTTAATc                                                                              <  7:304465/149‑1 (MQ=255)                                                              ttttctcattctcgttcggcatgtagagaaggccggattacaggccagcccgccgacccccgacacggagcgagagaatgagAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGa                                                                                           >  7:134533‑M2/83‑135 (MQ=255)                                                              ttttctcattctcgttcggcatgtagagaaggccggattacaggccagcccgccgacccccgacacggagcgagagaatgagAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGa                                                                                           <  8:134533‑M2/53‑1 (MQ=255)                                                                aaCTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAgcggg                                                                                                         >  1:300850/1‑119 (MQ=255)                                                                aaCTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAgcggg                                                                                                         <  2:300850/119‑1 (MQ=255)                                                                aaCTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCa                                                                            >  8:22848/1‑148 (MQ=255)                                                                aaCTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCACATTTATTTTCAATGAATTGCGCTAGCGCGGCGGGTACCTGCTAGCACCTGTTAATcaa                                                                            >  3:28653/1‑146 (MQ=255)                                                                  CTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAAc                                                                         <  5:332698‑M1/149‑1 (MQ=255)                                                                     attctcgttcggcatgtagagaaggccggattacaggccagcccgccgacccccgacacggagcgagagaatgagAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGc                                                                       >  7:67957‑M2/76‑148 (MQ=255)                                                                                         gggTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCTGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACaaa                                                  <  1:339098/149‑1 (MQ=255)                                                                                          ggTCTGCGGGCTGGCCTGTAATGCGGCCTTCTCTACATGCCTAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTTCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAg                                                 <  4:28653/149‑1 (MQ=255)                                                                                          ggTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACaaa                                                  >  8:290216/1‑148 (MQ=255)                                                                                          ggTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACaaa                                                  <  7:290216/148‑1 (MQ=255)                                                                                               gcggGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCAc                                            >  7:39110/1‑149 (MQ=255)                                                                                                     tGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATcc                                      >  1:328627/1‑149 (MQ=255)                                                                                                          tGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAg                                                 >  5:323642/1‑133 (MQ=255)                                                                                                          tGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAg                                                 <  6:323642/133‑1 (MQ=255)                                                                                                              aTCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGACCCCATCCTCGGGCGcc                             >  3:291100/1‑149 (MQ=255)                                                                                                                 cGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAgcggggcgg                                                                                                     <  5:165696/74‑1 (MQ=255)                                                                                                                 cGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAgcggggcgg                                                                                                     >  6:165696/1‑74 (MQ=255)                                                                                                                    ccTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGc                       >  6:343536/1‑149 (MQ=255)                                                                                                                      ttCTCTACATGCCGAACGAGAATGAGAAAACACCTCatttattt                                                                                                                              <  3:42907/44‑1 (MQ=255)                                                                                                                      ttCTCTACATGCCGAAAGAGAATGAGAAAACACCTCatttattt                                                                                                                              >  4:42907/1‑44 (MQ=255)                                                                                                                        ctctACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTa                   >  3:159230/1‑149 (MQ=255)                                                                                                                           tACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAgg                                                <  2:335270/117‑1 (MQ=255)                                                                                                                           tACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAgg                                                >  1:335270/1‑117 (MQ=255)                                                                                                                           tACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTAc                  <  8:39110/147‑1 (MQ=255)                                                                                                                                   gAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTg         >  5:29924/1‑148 (MQ=255)                                                                                                                                   gAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTg         >  5:251046/1‑148 (MQ=255)                                                                                                                                   gAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGATCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTg         >  5:29922/1‑148 (MQ=255)                                                                                                                                        agaatgagAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTg    >  5:304575‑M2/9‑148 (MQ=255)                                                                                                                                         gaatgagAAAACACCTCATTTATTATCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGaa  <  8:67957‑M2/142‑1 (MQ=255)                                                                                                                                                |                                                                                                                                              CCAGGCCCAACAGTGCAGCATGCAGGGCACGACTCAAGGGGTGGCGCTGTGGAACCGGGGTAAAACTCATTCTCTCGCTCCGTGTCGGGGGTCGGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAA  >  NC_002947/5414100‑5414384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.