New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5685154 =	59 (1.040)	3 (0.060)	3/246	NT	5.3%	coding (1739/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	5685206 =	50 (0.930)					coding (1687/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver

CGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACCTGCTGCAGCGCTACAACCCCTTCCGGACTGAGC  >  NC_002947/5685058‑5685348                                                                                                                                                     |                                                                                                                                               cGCTGCAAGTAATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATc                                                                                                                                                <  8:183260/149‑1 (MQ=255)  gCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCT‑‑CTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGtt                                                                                                                                             >  6:128585/1‑149 (MQ=255)    tGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGtt                                                                                                                                             >  8:211288/1‑149 (MQ=255)    ctgacctgctggccgactttgccgccggccagttgccgcaactgactgaaatcgagcaattggccgggcatctgcacagcctggccgaaaacgATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGtt                                                                                                                                             >  5:3280‑M1/94‑149 (MQ=255)      cAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGtt                                                                                                                                             <  8:333707/147‑1 (MQ=255)       aaGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTc                                                                                                                                          <  3:284996/149‑1 (MQ=255)       aaGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTc                                                                                                                                          <  7:106599/149‑1 (MQ=255)       aaGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTc                                                                                                                                          <  8:130245/149‑1 (MQ=255)        aGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCg                                                                                                                                         <  4:183014/149‑1 (MQ=255)            aTCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTc                                                                                                                                          <  2:203543/144‑1 (MQ=255)            aTCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTc                                                                                                                                          <  2:198061/144‑1 (MQ=255)            aTCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTc                                                                                                                                          >  1:198061/1‑144 (MQ=255)            aTCGCTGACCGGCGTGTCGTGGCCGCCGCTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTc                                                                                                                                          >  1:203543/1‑144 (MQ=255)                 cgactttgccgccggccagttgccgcaactgactgaaatcgagcaattggccgggcatctgcacagcctggccgaaaacgATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATc                                                                                                                                                <  2:166558‑M1/53‑1 (MQ=255)                 cgactttgccgccggccagttgccgcaactgactgaaatcgagcaattggccgggcatctgcacagcctggccgaaaacgATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATc                                                                                                                                                >  1:166558‑M1/81‑133 (MQ=255)                   aCCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGAGCGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCtgtg                                                                                                                              <  8:230401/149‑1 (MQ=255)                     cGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCtgtg                                                                                                                              >  7:151340/1‑147 (MQ=255)                     cGGCGTGTCGTCGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCa                                                                                                                            <  6:252416/149‑1 (MQ=255)                            tCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGccc                                                                                                                     >  6:186626/1‑149 (MQ=255)                              gTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCg                                                                                                                    <  7:175649/148‑1 (MQ=255)                                       ggTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGGCCAGCAACTGCGGATCGAGGCCATCGACACGGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCt                                                                                                          <  4:338491/149‑1 (MQ=255)                                       ggTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCt                                                                                                          <  8:185921/149‑1 (MQ=255)                                              tGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCt                                                                                                          >  8:82410/1‑142 (MQ=255)                                              tGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCt                                                                                                          <  7:82410/142‑1 (MQ=255)                                                cAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGTTCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTtcag                                                                                                 >  3:15579/1‑149 (MQ=255)                                                   aTAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTtcagtca                                                                                              <  8:151340/149‑1 (MQ=255)                                                         cTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCg                                                                                        <  8:133549/149‑1 (MQ=255)                                                         cTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCg                                                                                        >  7:281374/1‑149 (MQ=255)                                                         cTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCg                                                                                        <  7:211288/149‑1 (MQ=255)                                                         cTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCg                                                                                        >  7:120790/1‑149 (MQ=255)                                                          tCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCgg                                                                                       >  1:69683/1‑149 (MQ=255)                                                          tCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCgg                                                                                       >  1:45318/1‑149 (MQ=255)                                                          tCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCgg                                                                                       >  8:262550/1‑149 (MQ=255)                                                           cAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCgg                                                                                       >  6:296176/1‑148 (MQ=255)                                                            aaGGCTGGCCAGATGGCCCTGCGCCT‑‑CTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCaa                                                                                    <  5:128585/148‑1 (MQ=255)                                                                   gCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTTGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTgg                                                                                <  7:27320/147‑1 (MQ=255)                                                                      aGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCcggc                                                                           >  1:44460/1‑149 (MQ=255)                                                                       gATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCcggcg                                                                          <  2:69683/149‑1 (MQ=255)                                                                              cTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCcggc                                                                           <  8:111426/141‑1 (MQ=255)                                                                              cTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCcggc                                                                           >  7:111426/1‑141 (MQ=255)                                                                                       gCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCcagc                                                           <  8:281374/148‑1 (MQ=255)                                                                                            gAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCaaa                                                                     <  3:263352/133‑1 (MQ=255)                                                                                            gAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCaaa                                                                     >  4:263352/1‑133 (MQ=255)                                                                                             aacgatgccccggcggctgccggtgtcgatggcctcgatccgcagttgctgggcatCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTcag                                                    >  5:3280‑M2/57‑149 (MQ=255)                                                                                                gatgccccggcggctgccggtgtcgatggcctcgatccgcagttgctgggcatCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCg                                                                 >  1:166558‑M2/54‑133 (MQ=255)                                                                                                gatgccccggcggctgccggtgtcgatggcctcgatccgcagttgctgggcatCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCg                                                                 <  2:166558‑M2/80‑1 (MQ=255)                                                                                                    CCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGt                                              >  2:44460‑M1/1‑148 (MQ=255)                                                                                                       aGCAACTGCGGTTCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTgaac                                          <  4:15579/149‑1 (MQ=255)                                                                                                             tGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAacac                                    >  3:47674/1‑149 (MQ=255)                                                                                                               cGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACct                                  >  1:262209/1‑149 (MQ=255)                                                                                                                   tCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGTTCGTTCACctgcct                              <  5:186626/149‑3 (MQ=255)                                                                                                                    cGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACCtgctgc                             <  8:148985/149‑1 (MQ=255)                                                                                                                     gAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACCTGCTGCa                            <  4:47674/149‑1 (MQ=255)                                                                                                                        gCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACCTGCTGCAgcg                         >  6:353041/1‑149 (MQ=255)                                                                                                                          cATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGAGTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACCTGCTGCAgcgg                        >  7:254446/1‑147 (MQ=255)                                                                                                                            tCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACCTGCTGCAGCGCTa                      >  4:163958/1‑148 (MQ=255)                                                                                                                              gACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTcaggcag                                                <  3:139996/120‑1 (MQ=255)                                                                                                                              gACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTcaggcag                                                >  4:139996/1‑120 (MQ=255)                                                                                                                                   cGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGACAGGCAGGTGAATGAACACCTGCTGCAGCGCTACAACCCCt              >  1:178285/1‑149 (MQ=255)                                                                                                                                     gCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTgaac                                          >  6:244217/1‑119 (MQ=255)                                                                                                                                     gCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTgaac                                          <  5:244217/119‑1 (MQ=255)                                                                                                                                           gccgGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACCTGCTGCAGCGCTACAACCCCTTCCGGACt      <  5:296176/149‑1 (MQ=255)                                                                                                                                               gggcatCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACCTGCTGCAGCGCTACAACCCCTTCCGGACTGAGc  <  5:363438‑M2/143‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               CGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGCCTCGCTGCGAAAAATGCCCAGCAACTGCGGATCGAGGCCATCGACACCGGCAGCCGCCGGGGCATCGTTTTCGGCCAGGCTGTGCAGATGCCCGGCCAATTGCTCGATTTCAGTCAGTTGCGGCAACTGGCCGGCGGCAAAGTCGGCCAGCAGGTCAGGCAGGTGAACGAACACCTGCTGCAGCGCTACAACCCCTTCCGGACTGAGC  >  NC_002947/5685058‑5685348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.