New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2103125 =	22 (0.710)	11 (0.360) +TT	6/286	3.0	27.4%	intergenic (+85/‑1)	PP_t23/PP_t24	tRNA‑Gly/tRNA‑Gly
	?	NC_002947	= 2242257	37 (1.190)					noncoding (76/76 nt)	PP_t30	tRNA‑Glu

TTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTTTTCGT  >  NC_002947/2102980‑2103272                                                                                                                                                  |                                                                                                                                                    ttGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGc                                                                                                                                                   <  5:78339/148‑1 (MQ=255) ttGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGGCTCGTGTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGGGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGc                                                                                                                                                   <  7:64541/148‑1 (MQ=255)  tcgTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCg                                                                                                                                                  <  6:109253/146‑1 (MQ=255)     tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCggg                                                                                                                                                <  6:18183/147‑1 (MQ=255)     tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCggg                                                                                                                                                <  7:121621/147‑1 (MQ=255)            cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTc                                                                                                                                        <  1:133673/148‑1 (MQ=255)               ccTCGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTACCGCTCCAGTTTAAATACTGTTGCGTCTCTGCGGTTCCTTGGTGGGGAATGTCGTAATTGAGCTTCACGCCGAACGTGTTAATGATTCAAAATGCGGGAATAGCTCAGt                                                                                                                                     <  4:119025/148‑1 (MQ=21)                             gggTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGa                                                                                                                        <  7:19827/147‑1 (MQ=255)                                                       cGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGtt                                                                                              >  4:115126/1‑147 (MQ=255)                                                          tCCAGTTTAAATACTGTGGCGTCTATGCGGAGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCAGAAGGTGGTAAAGCGTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGAGAGTTCGAg                                                                                          >  5:125375/1‑148 (MQ=37)                                                                      ccccttcgtctagtggcctaggacaccgccctttcacggcggtaacaggggttcgagtcccctaggggacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCg                                                                              <  6:78855‑M1/72‑1 (MQ=255)                                                                       cccttcgtctagtggcctaggacaccgccctttcacggcggtaacaggggttcgagtcccctaggggacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGc                                                                             <  1:91450‑M1/73‑1 (MQ=255)                                                                        ccttcgtctagtggcctaggacaccgccctttcacggcggtaacaggggttcgagtcccctaggggacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTGCGAGTCTCGTTTCCCGCt                                                                            <  3:119025‑M1/74‑1 (MQ=255)                                                                         cttcgtctagtggcctaggacaccgccctttcacggcggtaacaggggttcgagtcccctaggggacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTCCGAGTCTCGTTTCCCGCt                                                                            <  3:47046‑M1/74‑1 (MQ=255)                                                                                 tATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAt                                                                      >  5:7862/1‑145 (MQ=255)                                                                                      ggTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGAttt                                                              >  6:125613/1‑148 (MQ=255)                                                                                      ggTGCAGTGGCTGTGAATGTCGTATAGCCGAGTCACGCCGTACGTGTAACAGAGTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGAttt                                                              <  3:79370/148‑1 (MQ=17)                                                                                              accgccctttcacggcggtaacaggggttcgagtcccctaggggacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCt                                                       <  4:122754‑M1/95‑1 (MQ=255)                                                                                              accgccctttcacggcggtaacaggggttcgagtcccctaggggacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATAAAGATTTCCAGCCt                                                       <  3:139614‑M1/95‑1 (MQ=255)                                                                                                cgccctttcacggcggtaacaggggttcgagtcccctaggggacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATAAAAATTTAAAgcctaaa                                                    <  2:53526‑M1/98‑4 (MQ=255)                                                                                                  gtgAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCAc                                                  >  2:144777/1‑148 (MQ=255)                                                                                                     tttcacggcggtaacaggggttcgagtcccctaggggacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATAAAGATTTACagccttcatcgga                                               <  2:139936‑M1/103‑7 (MQ=255)                                                                                                            tAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGt                                        <  5:125613/148‑1 (MQ=255)                                                                                                             cggttagagggtctcgagtcccctatgtgacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTa                                       >  4:139614‑M1/38‑148 (MQ=255)                                                                                                                ggCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAATTCAAGATTTACAGCCTTCCACGGAGGTCTGTAGAt                                    >  5:144543/1‑148 (MQ=255)                                                                                                                ggCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGa                                     >  5:147202/1‑147 (MQ=255)                                                                                                                                  tGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCtt                  >  5:59983/1‑148 (MQ=255)                                                                                                                                  cctaggggacgccaaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATAAATATATAAAGCCTTAAACGGATGGCTTTAGATCCAAGAAAATAAACGc                    <  4:100624‑M1/130‑1 (MQ=255)                                                                                                                                     tAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGCGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCGTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGATTCgg               >  7:92405/1‑148 (MQ=255)                                                                                                                                     tAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCgg               >  7:92401/1‑148 (MQ=255)                                                                                                                                      aaaGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGc              >  6:28804/1‑148 (MQ=255)                                                                                                                                              caaaTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCttttt      >  3:122754‑M1/5‑148 (MQ=255)                                                                                                                                                aaTGCGGGAATATCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCACATCAAGATTTACAGCGTTCCACGGAGGGCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTTTTc    <  3:38175‑M1/146‑1 (MQ=255)                                                                                                                                                aTTGCGGTAATTGCTCAGTTTGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGTTCTGTAGATCCTCGAAACTAGACGCTTCGGCGTCTTTtttc    <  6:125375/148‑1 (MQ=25)                                                                                                                                                  tGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAAAAGACGCCGAAGCGTCTATtttcga  <  1:139936/148‑2 (MQ=18)                                                                                                                                                  tGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATAAAGATTTACCGCCTGACACGGAGGTCTGTAGCTCCTCGAAAAt                          >  4:125500/1‑124 (MQ=17)                                                                                                                                                  |                                                                                                                                                    TTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAGTTTAAATACTGTGGCGTCTATGCGGTGCAGTGGTGGTGAAGGTCGTAAAGGCGCTTCACGCCGAACGTGGTAAAGCTTCAAATTGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAGATTTACAGCCTTCCACGGAGGTCTGTAGATCCTCGAAAATAGACGCTTCGGCGTCTTTTTTCGT  >  NC_002947/2102980‑2103272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.