New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	342927 =	48 (0.870)	3 (0.060)	3/240	NT	6.6%	intergenic (+58/+74)	gabP‑I/PP_5439	gamma‑aminobutyrate permease/hypothetical protein
	?	NC_002947	342976 =	40 (0.770)					intergenic (+107/+25)	gabP‑I/PP_5439	gamma‑aminobutyrate permease/hypothetical protein

CTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/342972‑342927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacaggccCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCAG  >  NC_002947/342976‑343123                                                                                                                                                                                                    CTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCAT                                                >  1:60062/1‑148  TGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTG                                                                                           >  3:3696/1‑104  TGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTG                                                                                           <  4:3696/104‑1                                         CAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCA       >  5:290820/1‑149                                              CCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCAG  >  5:264779/1‑149                                                                                                                                                                                                    CTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/342972‑342927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacaggccCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCAG  >  NC_002947/342976‑343123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.