New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 342927 = | 48 (0.870) | 3 (0.060) | 3/240 | NT | 6.6% | intergenic (+58/+74) | gabP‑I/PP_5439 | gamma‑aminobutyrate permease/hypothetical protein |
? | NC_002947 | 342976 = | 40 (0.770) | intergenic (+107/+25) | gabP‑I/PP_5439 | gamma‑aminobutyrate permease/hypothetical protein |
GACTGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGG > NC_002947/342779‑343062 | ctggatggcgctgacgaagagaccaccatggcctggctggagagtgatgagttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgg > 5:264779‑M1/149‑149 (MQ=255) aCTGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTgg > 6:353565/1‑149 (MQ=255) tggcgctgacgaagagaccaccatggcctggctggagagtgatgagttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGCCtg > 5:290820‑M1/144‑149 (MQ=255) cgcTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCtg > 2:29941/1‑149 (MQ=255) ctgAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATg > 3:189831/1‑149 (MQ=255) aGTATTGGTGTGGTGGGGGCTGGGTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGcc < 5:224089/149‑1 (MQ=255) aGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGcc > 1:87194/1‑149 (MQ=255) gTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGccc < 2:286832/149‑1 (MQ=255) gtgtggtgGCGGCTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTcgc < 6:361577/149‑1 (MQ=255) tggtggCGGCTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCggg < 1:317213/149‑1 (MQ=255) gcggcTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGc > 7:179451/1‑149 (MQ=255) gcggcTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGc < 4:189831/149‑1 (MQ=255) ggctggctTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGccc > 7:186342/1‑149 (MQ=255) tggctTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCg > 3:339364/1‑147 (MQ=255) gctTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCNTGTGATGGCCCTTTCGCGGGCAAGCCCGCa < 1:29941/147‑1 (MQ=255) gctTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAg < 3:309417/148‑1 (MQ=255) gctTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAg < 2:270232/148‑1 (MQ=255) gCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGtt < 3:252764/147‑1 (MQ=255) cTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTca < 8:179451/148‑1 (MQ=255) atgagttccaggacgcctatatcgccgcttccgaactggtggccaagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAg > 1:60062‑M1/103‑148 (MQ=255) aCCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGc > 2:7611/1‑149 (MQ=255) ccGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGcc > 5:44392/1‑149 (MQ=255) cGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTcgc < 1:256/120‑1 (MQ=255) cGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTcgc > 2:256/1‑120 (MQ=255) cGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGc < 3:50815/124‑1 (MQ=255) cGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGc > 4:50815/1‑124 (MQ=255) aGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAg < 5:353565/149‑1 (MQ=255) gcgAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAg > 5:343756/1‑149 (MQ=255) ccGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCTGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTtat < 5:346340/148‑1 (MQ=255) ccGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTtata > 2:123998/1‑149 (MQ=255) ccGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTtata < 6:343756/149‑1 (MQ=255) ccGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTtata < 6:44392/149‑1 (MQ=255) gggcgggcGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATg < 1:123998/149‑1 (MQ=255) cgggcggCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGcc < 8:186342/149‑1 (MQ=255) ggcgCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGt > 6:203105/1‑148 (MQ=255) gACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCTCGCACTGTGAAGGGTGCGGCATTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACAACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGaa < 4:247414/149‑1 (MQ=255) cAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACt < 4:339364/149‑1 (MQ=255) caagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACcaca < 4:3696‑M1/45‑1 (MQ=255) caagcagcagcaacagcagaagcagttcggctgacagggccatataacccgctcctacgGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACcaca > 3:3696‑M1/60‑104 (MQ=255) gctgAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTtgct < 1:7611/148‑1 (MQ=255) tgAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTtgctgct > 4:185364/1‑149 (MQ=255) aaaTGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTtgctgctgc > 6:68235/1‑149 (MQ=255) caaaaaaaGGCCGCACCCTTCACAGGGCGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTGATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTTgctgctgct > 2:229660/7‑149 (MQ=38) aaTGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCA‑GTtgctgctgc < 2:87194/148‑1 (MQ=255) aGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTTGCTGCTGCTTGGccac < 5:68235/149‑1 (MQ=255) cgcgCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTTGCTGCTGCTTg > 6:195225/1‑140 (MQ=255) cgcgCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTTGCTGCTGCTTg < 5:195225/140‑1 (MQ=255) cgcgCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTTGCTGCTGCTTGGCCACCAGt > 2:225165/1‑149 (MQ=255) gcgcCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTTGCTGCTGCTTGGCCACCAGtt > 8:295522/1‑149 (MQ=255) aGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTTGCTGCTGCTTGGCCACCAGTTCGGAAgcggcg < 3:185364/149‑1 (MQ=255) aGGGCGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTAGTTGCTGCTGCTTGGCCACCAGTTCGGAAgcggc < 1:229660/149‑1 (MQ=255) ggCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTCCTTCTGAT‑GTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAgg > 6:41168/1‑149 (MQ=255) tttttttGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAg < 6:298839/63‑1 (MQ=255) tttttttGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAg > 5:298839/1‑63 (MQ=255) | GACTGCGCTGCTGAGTATTGGTGTGGTGGCGGCTGGCTTGCTGGTGCACCGCAAGCGCGAGGCTGCCGGGCGGGCGGCGCTGGACAGCTGATCGGCGCTGGCTGAAATGAGAAGGCCGCGCCCTGTGAAGGGTGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCT‑GTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGG > NC_002947/342779‑343062 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |