New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	487574 =	47 (0.850)	3 (0.060)	3/242	NT	6.1%	coding (728/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_002947	487613 =	48 (0.920)					coding (689/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase

CGACAAGTTTGGCATTGCCAACCCGCGTATCCTCGTGTGCGGCCTCAACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/487723‑487574 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGT‑TGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACACGTT  >  NC_002947/487613‑487757                                                                                                                                                                                                                                                                                                          CGACAAGTTTGGCATTGCCAACCCGCGTATCCTCGTGTGCGGCCTCAACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGC                                                                                                                                                     >  8:67289/1‑149                                               AACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGCC                                                                                                                                                    >  1:353518/1‑104                                               AACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGCC                                                                                                                                                    <  2:353518/104‑1                                                                                                             CCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGC                                                             <  5:7382/129‑1                                                                                                             CCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGC                                                             >  6:7382/1‑129                                                                                                               TGGCCCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCAGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGT‑TGGCAATGCCAAACTTGT                                      >  1:17455/1‑149                                                                                                                                                GCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGT‑TGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACAC     >  3:138716/1‑149                                                                                                                                                    GCCAGGGTCGGGTCGATGATGTCGATTTCTTCGCGGCCCAGGGGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGTCGATACGCGGGTCTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACACGTT  <  1:273688/149‑1                                                                                                                                                                                                                                                                                                          CGACAAGTTTGGCATTGCCAACCCGCGTATCCTCGTGTGCGGCCTCAACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/487723‑487574 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGT‑TGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACACGTT  >  NC_002947/487613‑487757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.