New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	487574 =	47 (0.850)	3 (0.060)	3/242	NT	6.1%	coding (728/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_002947	487613 =	48 (0.920)					coding (689/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase

CGGATGATCGGCAGGCCCAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTT  >  NC_002947/487427‑487719                                                                                                                                                    |                                                                                                                                                   cGGATGATCGGCAGGCCCAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCgg                                                                                                                                                   >  7:61262/1‑149 (MQ=255)  aacgtgtaacccgtatcctgcatgccgacatgcgcgacaagtttggcattgccagacccgcgtatcgacgtgtgcggcctcaacccgcatgcgggcgagggcggccccctgggccgcgaagaaatcgacatcatcgacccgaccctGGc                                                                                                                                                  <  1:273688‑M1/3‑1 (MQ=255)      gtgtaacccgtatcctgcatgccgacatgcgcgacaagtttggcattgccaacccgcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCcgc                                                                                                                                              >  3:138716‑M1/143‑149 (MQ=255)                 ccAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATg                                                                                                                                   >  4:240089/1‑149 (MQ=255)                          cggtCACTGCTGCTCAGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGAACCGCTTCGCAGTGCTCCAGATATTTGGGGGTAAACTGGGTTTCGGCCGGGAGCGGCCCGAGCAGGTCGATGCCTTGGGtt                                                                                                                          <  8:61262/146‑2 (MQ=255)                           gTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGccc                                                                                                                                                >  4:73183/1‑126 (MQ=255)                           gTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGccc                                                                                                                                                <  3:73183/126‑1 (MQ=255)                                   ctgcGCCGAAGACTTTGTACTTGAGTAAGGGAAGGCACTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCgg                                                                                                                 >  2:197444/1‑149 (MQ=255)                                    tgcGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCggg                                                                                                                >  5:90785/1‑149 (MQ=255)                                       acaagtttggcattgccaacccgcgtatcctcgtgtgcggcctcaacccgcatgctggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCa                                                                                                             >  1:17455‑M1/110‑149 (MQ=255)                                          gAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAggg                                                                                                          >  2:90365/1‑149 (MQ=255)                                           aaGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGt                                                                                                         <  3:240089/149‑1 (MQ=255)                                                    tACTTGAGTGCGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCga                                                                                                 <  2:246637/148‑1 (MQ=255)                                                     aCTTGAGTACGGTAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCa                                                                                                                                     <  5:203064/111‑1 (MQ=255)                                                     aCTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCa                                                                                                                                     >  6:203064/1‑111 (MQ=255)                                                      cTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCgatg                                                                                               <  1:90365/148‑1 (MQ=255)                                                       ttGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGt                                                                                                                           <  7:194855/119‑1 (MQ=255)                                                       ttGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGt                                                                                                                           >  8:194855/1‑119 (MQ=255)                                                       ttGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCgatgat                                                                                             >  7:235614/1‑149 (MQ=255)                                                          aggaCGGGAAGGCCCTGGGCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGt                                                                                           <  8:246841/145‑1 (MQ=255)                                                           gTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGCGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCg                                                                                         <  2:166269/149‑1 (MQ=255)                                                             gcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAgg                                                                                                           <  5:7382‑M1/42‑1 (MQ=255)                                                             gcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAgg                                                                                                           >  6:7382‑M1/88‑129 (MQ=255)                                                             aCGGGACGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGCGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGGCGGCTCGATGATGTCGAt                                                                                       <  4:246343/149‑1 (MQ=255)                                                               gggAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCgat                                                                                                >  6:193479/1‑138 (MQ=255)                                                               gggAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCgat                                                                                                <  5:193479/138‑1 (MQ=255)                                                                     gCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTc                                                                                                        <  4:348556/124‑1 (MQ=255)                                                                     gCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTc                                                                                                        >  3:348556/1‑124 (MQ=255)                                                                       ccTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCgg                                                                            <  6:90785/149‑1 (MQ=255)                                                                           gTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTCCTT‑CGCGGcc                                                                          >  8:101855/1‑147 (MQ=255)                                                                              gTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGt                                                                     >  7:246630/1‑149 (MQ=255)                                                                                 gTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGgc                                                                  >  8:60299/1‑149 (MQ=255)                                                                                   aCATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGgccg                                                                >  7:220072/1‑149 (MQ=255)                                                                                   aCATCGCCAGCACCGCATCGCAGTGCAACAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCACGATGATGTCGATTTCTT‑CGCGGCCCAGGTGgccg                                                                >  7:224533/1‑149 (MQ=255)                                                                                              aCCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCg                                                      >  7:67289/1‑148 (MQ=255)                                                                                               ccGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCTGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCCGCGGCCCAGGTGGCCGCCCTCGCCCGc                                                     <  1:197444/149‑1 (MQ=255)                                                                                               ccGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCa                                                    >  2:273688/1‑149 (MQ=255)                                                                                                       cAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGAttt                                                                                     <  4:48176/109‑1 (MQ=255)                                                                                                       cAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGAttt                                                                                     >  3:48176/1‑109 (MQ=255)                                                                                                       cAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCgg                                                                            <  4:188126/117‑1 (MQ=255)                                                                                                       cAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCgg                                                                            >  3:188126/1‑117 (MQ=255)                                                                                                        aGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCTCATg                                                  <  5:251096/142‑1 (MQ=255)                                                                                                        aGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCTCATg                                                  >  6:251096/1‑142 (MQ=255)                                                                                                            cTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAgg                                        <  8:220072/148‑1 (MQ=255)                                                                                                               cAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGAt                                                                                       <  6:234273/99‑1 (MQ=255)                                                                                                               cAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGAt                                                                                       >  5:234273/1‑99 (MQ=255)                                                                                                                aGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGca                                   >  7:333728/1‑149 (MQ=255)                                                                                                                        gggggTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGACCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGa                           >  1:160293/1‑149 (MQ=255)                                                                                                                          gggTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATa                         >  1:86430/1‑149 (MQ=255)                                                                                                                                    ggTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGcaca                                 >  1:198265/1‑131 (MQ=255)                                                                                                                                    ggTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGcaca                                 <  2:198265/131‑1 (MQ=255)                                                                                                                                    ggTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTCCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTgg               <  7:101855/149‑1 (MQ=255)                                                                                                                                           gccggcAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAg                                         >  1:38206/1‑116 (MQ=255)                                                                                                                                           gccggcAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAg                                         <  2:38206/116‑1 (MQ=255)                                                                                                                                              ggcAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCaaa     <  7:60299/149‑1 (MQ=255)                                                                                                                                                 aGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACtt  >  7:77672/1‑149 (MQ=255)                                                                                                                                                    GGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGtt                                            >  1:353518‑M1/1‑104 (MQ=255)                                                                                                                                                    GGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGtt                                            <  2:353518‑M1/104‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CGGATGATCGGCAGGCCCAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTT‑CGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTT  >  NC_002947/487427‑487719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.