New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	499204 =	30 (0.540)	5 (0.100)	4/228	NT	19.3%	intergenic (+48/‑248)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	499271 =	15 (0.300)					intergenic (+115/‑181)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein

CATCATCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/499365‑499204 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcatgccCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT  >  NC_002947/499271‑499418                                                                                                                                                                                                                                                                                                                          CATCATCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGT                                                                                                                                                                     >  5:76862/1‑149     ATCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGC                                                                                                                                                                 <  4:50762/149‑1        CGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG                                                                                                                                                               <  6:76862/148‑1          GATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCCACCACGAAACCTGTGGGAGCGGGCCTGCCCGCGAAGAGGCCGGCGACGCCATAGACGTCAGCAGGCCAGGACCGTTCGCGGGCc                                                                                                                                                            >  6:273955/1‑148                         GTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGC                                                                                                                                                             >  3:154297/1‑133                         GTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGC                                                                                                                                                             <  4:154297/133‑1                                                                                                      CCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCG                                                              >  6:37469/1‑149                                                                                                      CCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAA                                                                         <  1:307650/138‑1                                                                                                      CCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAA                                                                         >  2:307650/1‑138                                                                                                        CGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCG                                                              >  2:147231/1‑149                                                                                                             AGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATG                                                       <  5:37469/149‑1                                                                                                                                                        GCGGGCATGCCCGCTCCCACATAGGCTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTC              <  1:147231/149‑1                                                                                                                                                          GGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTT            <  3:140584/147‑1                                                                                                                                                          GGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTT            >  4:140584/1‑147                                                                                                                                                                  CCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT  >  2:195709/1‑149                                                                                                                                                                                                                                                                                                                          CATCATCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/499365‑499204 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcatgccCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT  >  NC_002947/499271‑499418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.