| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 499204 = | 30 (0.540) | 5 (0.100) | 4/228 | NT | 19.3% | intergenic (+48/‑248) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | 499271 = | 15 (0.300) | intergenic (+115/‑181) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein | |||||
AGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT > NC_002947/499128‑499418 | aGTACGCAATGGCGCACACGCTTTTCTTATTGCGACATAGGGGGGCCCTAAACTTGCCTATGCCTATTTGGGAGCGGGCATGCCGGGGAAGGGGCCTGGCCTGCTGATCTCTATGGCTTAGCCGGCCTCTTCGCGGGAATGCCCGCTc < 4:298348/148‑1 (MQ=255) ggAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGccc > 1:97155/1‑134 (MQ=255) ggAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGccc < 2:97155/134‑1 (MQ=255) gGCCCGCGAACGGTCCTGGCCTGCTGACGTCTATGGCGTCGCCGGCCTCTTCGCGGGCAGGCCCGCTCCCAC‑‑AGGTTTCGTGGTGGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATc > 6:273955‑M1/2‑149 (MQ=255) GCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTac < 4:154297‑M1/133‑1 (MQ=255) GCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTac > 3:154297‑M1/1‑133 (MQ=255) cccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgccCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACaaa < 1:307650‑M2/77‑1 (MQ=255) cccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgccCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACaaa > 2:307650‑M2/62‑138 (MQ=255) cccgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgccCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCg > 6:37469‑M2/62‑149 (MQ=255) CCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCg < 6:76862‑M1/148‑1 (MQ=255) cgcgaagaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgccCGCTCCCACATAGGCTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCg > 2:147231‑M2/60‑149 (MQ=255) GCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGgat < 4:50762‑M1/149‑1 (MQ=255) agaggccggctcagccatagagatcagcaggccaggcccgttcgcgggcatgccCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGatgatg < 5:37469‑M2/95‑1 (MQ=255) ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGatgatg > 5:76862‑M1/1‑149 (MQ=255) gcctggcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCAt > 1:324194/1‑149 (MQ=255) gcctggcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCAt > 8:301758/1‑149 (MQ=255) gcctggcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCAt > 6:25800/1‑149 (MQ=255) ggcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtctc < 7:301758/149‑1 (MQ=255) ccctgCTTATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtctct < 3:311818/148‑1 (MQ=255) ctgctgATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGGTGATGGCATtctatc > 7:263707/1‑148 (MQ=255) ctgctgAGCTCTTTGGCGGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCTTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtctctc < 8:263707/148‑1 (MQ=255) tctATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTAccccc > 4:100485/1‑148 (MQ=255) ctATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGa > 2:341874/1‑149 (MQ=255) aTGGCTGAGCCGGCCTCTTCGCGGGCATGTCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGAATTCTCTCAGTACCCCCGAtt > 8:69883/1‑149 (MQ=255) gCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTc < 5:25800/149‑1 (MQ=255) cTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTAGTGGTTGGCTCGCAACGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCATCCATACCGATGATGGCATTCTCTCAGTACCCACGATTTTCg > 4:8806/1‑149 (MQ=39) aGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCgg < 3:100485/147‑1 (MQ=255) gCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtctc > 8:46123/1‑126 (MQ=255) gCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATtctc < 7:46123/126‑1 (MQ=255) gcgggcatgccCGCTCCCACATAGGCTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGtctc < 1:147231‑M2/138‑1 (MQ=255) gggcatgccCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCtctt < 3:140584‑M2/138‑1 (MQ=255) gggcatgccCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCtctt > 4:140584‑M2/10‑147 (MQ=255) cCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCtttt > 2:195709‑M2/2‑149 (MQ=255) | AGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT > NC_002947/499128‑499418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |