New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 769351	49 (0.880)	3 (0.060)	3/240	NT	6.4%	coding (1429/1440 nt)	mmuP	S‑methyl‑L‑methionine transporter
	?	NC_002947	= 769381	42 (0.810)					intergenic (+19/‑27)	mmuP/PP_0661	S‑methyl‑L‑methionine transporter/transcriptional regulator AmpR

TGGCCTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/769199‑769351 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggttccgGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGGCAACCCG  <  NC_002947/769381‑769234                                                                                                                                                                                                                                                                                                               TGGCCTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGT                                                                                                                                                          >  8:192823/1‑149   GCCTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGGCGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTC                                                                                                                                                        >  2:347820/1‑149                                            CCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTTCCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTG                                                                                                               <  2:123083/149‑1                                             CTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGG                                                                                                              <  7:192823/149‑1                                                TACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGG                                                                                                             <  5:31863/147‑1                                                                                                                                                   GGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGG          <  5:117297/147‑1                                                                                                                                                    GTTCCCGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGC                                   <  5:277587/121‑1                                                                                                                                                    GTTCCCGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGC                                   >  6:277587/1‑121                                                                                                                                                         GGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGCCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGGCAACCCG  >  1:347820/1‑149                                                                                                                                                                                                                                                                                                               TGGCCTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/769199‑769351 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggttccgGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGGCAACCCG  <  NC_002947/769381‑769234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.