New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 769351 | 49 (0.880) | 3 (0.060) | 3/240 | NT | 6.4% | coding (1429/1440 nt) | mmuP | S‑methyl‑L‑methionine transporter |
? | NC_002947 | = 769381 | 42 (0.810) | intergenic (+19/‑27) | mmuP/PP_0661 | S‑methyl‑L‑methionine transporter/transcriptional regulator AmpR |
CGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAGCCAA > NC_002947/769234‑769527 | cGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGGCGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACc > 1:347820‑M2/1‑148 (MQ=255) ccTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacc < 5:117297‑M2/147‑8 (MQ=255) ttCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCAc > 3:338690/1‑147 (MQ=255) cccTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTAACGCAGCCGCCGTACGGCCCCGATGGAAATCGTCGCCCCAGGTTCCGAGGCCGCATGAGCAGGTGATACTAGGCCACCGGAACCTAGc > 4:49494/1‑135 (MQ=255) cTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGa < 6:16627/149‑1 (MQ=255) cTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGAGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGa > 1:67527/1‑149 (MQ=255) cATTGTCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGa > 8:145706/1‑149 (MQ=255) cATTGCCTGGTGCTACCTGGCCTATTGGCTAACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGa > 1:214438/1‑149 (MQ=255) aTTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGAc > 6:68221/1‑149 (MQ=255) gCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACgggaac > 6:277587‑M2/1‑115 (MQ=255) gCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACgggaac < 5:277587‑M2/121‑7 (MQ=255) gTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGaaaa > 2:304786/1‑149 (MQ=255) tGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCGCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACGTAGCCACGAGAAGCCGCCGATGACCCAGAAAAc < 3:177824/149‑1 (MQ=255) tGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTAGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGACCCTAGCCACGAGAAGCCGCCGATGACCCAGAAAAc > 2:144490/1‑149 (MQ=255) ttGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGa < 7:145706/149‑1 (MQ=255) gCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACt > 8:189808/1‑149 (MQ=255) gCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACt > 5:194983/1‑149 (MQ=255) tGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGc < 2:180441/135‑1 (MQ=255) tGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGc > 1:180441/1‑135 (MQ=255) cGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTg < 2:214438/149‑1 (MQ=255) gCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGc < 8:111132/129‑1 (MQ=255) gCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGc > 7:111132/1‑129 (MQ=255) cAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTgaga < 6:117297/148‑1 (MQ=255) tACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCtt > 3:305342/1‑149 (MQ=255) aCCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTga > 7:27237/1‑141 (MQ=255) aCCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTga < 8:27237/141‑1 (MQ=255) gCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGaa < 5:68221/149‑1 (MQ=255) gCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGaa < 3:134939/149‑1 (MQ=255) cAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAg > 2:343966/1‑149 (MQ=255) cgccgTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGACGTGTc > 4:10753/1‑149 (MQ=255) ccgTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCgg < 1:304786/149‑1 (MQ=255) cGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCGAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGcgcg < 2:67527/148‑1 (MQ=255) cccGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACCGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACt < 4:338690/149‑1 (MQ=255) cGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACtt > 8:24891/1‑148 (MQ=255) cTGGAAATCGTCGCCCCAGGTTACAAGGCCGCCTGAGCAGGTGATACTAGGCCACAGAAACCTAGCCAAAAGAAGCCGCAGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCGTTCGAAGTGTCGGCGGGTTACTTg > 7:53523/1‑147 (MQ=255) aaTCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCa < 7:189808/149‑1 (MQ=255) tcgtcgCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCAcc < 1:144490/149‑1 (MQ=255) tcgCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGGTGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCAt > 8:8195/1‑149 (MQ=255) cccAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacctggggcgacgatttccagcggggccgtacggcggctgcggtacttgcacgtcagccaataggccaggtagcaccaggcaatgaagggcaagccgaagta < 5:31863‑M2/147‑107 (MQ=255) cccAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCgg < 6:194983/149‑1 (MQ=255) cccAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCgg > 1:170723/1‑149 (MQ=255) ccAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacctggggcgacgatttccagcggggccgtacggcggctgcggtacttgcacgtcagccaataggccaggtagcaccaggcaatgaagggcaagccgaagtacag < 7:192823‑M2/149‑110 (MQ=255) ccACGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCCGAACCTAGCCACGACAATCCGCCGATCACCCAGAAAACCTTGCCCCCCCTTTACTGGCTGAGAGCCTTCGAAGTTTCTGCGCGTTACTTTAACTTCTCCCATGCGGc < 8:53523/149‑1 (MQ=255) cAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacctggggcgacgatttccagcggggccgtacggcggctgcggtacttgcacgtcagccaataggccaggaagcaccaggcaatgaagggcaagccgaagtacagg < 2:123083‑M2/149‑111 (MQ=255) gTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCagaa > 6:102747/1‑149 (MQ=255) aGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAg < 5:102747/149‑1 (MQ=255) gTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAggg < 2:170723/149‑1 (MQ=255) tGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAgggg < 7:206320/149‑1 (MQ=255) aCTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCAc < 6:172483/110‑1 (MQ=255) aCTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCAc > 5:172483/1‑110 (MQ=255) gCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAGcc < 4:305342/149‑1 (MQ=255) ccACCGGAACCTAGCCACGAGAAGCCGCCGGTGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAGCCa < 7:8195/149‑1 (MQ=255) cACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAGCCaa < 3:10753/149‑1 (MQ=255) cACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAGCCaa > 2:193825/1‑149 (MQ=255) aCCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAGc < 2:159243/145‑1 (MQ=255) aCCGGAACCTAGCCACGAGAAGACGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAGc > 1:159243/1‑145 (MQ=255) | CGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAGCCAA > NC_002947/769234‑769527 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |