| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1539456 = | 54 (0.980) | 3 (0.060) | 3/242 | NT | 5.7% | coding (1114/2031 nt) | PP_1350 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 1539509 = | 49 (0.940) | coding (1061/2031 nt) | PP_1350 | two‑component system sensor histidine kinase/response regulator | |||||
GCACGCCACTGGACGAGGCACTTAACCAGCCGGTGTTCATTGCGTTCGAGCCGTTGAAGCCGTTCCTCCCGCAACTGAAGGAAACCGTGGAAAAACATCGAGTGGCGAAGATCGAGCGGGTAACCTGGCCCAAGGGCGACGACCTGCGCCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1539608‑1539456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccactCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGGCGTGCCGGAAAGCACCGTGGCTTCGTGGTTCCATTGGGTCACGTAAAGCTGT > NC_002947/1539509‑1539655 GCACGCCACTGGACGAGGCACTTAACCAGCCGGTGTTCATTGCGTTCGAGCCGTTGAAGCCGTTCCTCCCGCAACTGAAGGAAACCGTGGAAAAACATCGAGTGGCGAAGATCGAGCGGGTAACCTGGCCCAAGGGCGACGACCTGCGC < 3:178207/149‑1 AGTGGCGAAGATCGAGCGGGTAACCTGGCCCAAGGGCGACGACCTGCGCCACTCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGG > 5:329898/1‑148 AGTGGCGAAGATCGAGCGGGTAACCTGGCCCAAGGGCGACGACCTGCGCCACTCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGG < 6:329898/148‑1 TGGCGAAGATCGAGCGGGTAACCTGGCCCAAGGGCGACGACCTGCGCCACTCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGGCGT > 8:89331/1‑149 CGCCACTCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGGCGTGCCGGAAAGCACCGTGGCTTCGTGGTTCCATTGGGTCACG < 3:72213/145‑1 GCCACTCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGGCGTGCCGGAAAGCACCGTGGCTTCGTGGTTCCATTGGGTCACGTAAA < 5:21671/148‑1 ACTCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGGCGTGCCGGAAAGCACCGTGGCTTCGTGGTTCCATTGGGTCACGTAAAGCTG > 8:134888/1‑149 CTCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGGCGTGCCGGAAAGCACCGTGGCTTCGTGGTTCCATTGGGTCACGTAAAGCTGT < 4:178207/149‑1 CTCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGGCGTGCCGGAAAGCACCGTGGCTTCGTGGTTCCATTGGGTCACGTAAAGCTGT > 8:295523/1‑149 GCACGCCACTGGACGAGGCACTTAACCAGCCGGTGTTCATTGCGTTCGAGCCGTTGAAGCCGTTCCTCCCGCAACTGAAGGAAACCGTGGAAAAACATCGAGTGGCGAAGATCGAGCGGGTAACCTGGCCCAAGGGCGACGACCTGCGCCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1539608‑1539456‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccactCGATGTTTTTCCACGGTTTCCTTCAGTTGCGGGAGGAACGGCTTCAACGGCTCGAACGCAATGAACACCGGCTGGTTAAGTGCCTCGTCCAGTGGCGTGCCGGAAAGCACCGTGGCTTCGTGGTTCCATTGGGTCACGTAAAGCTGT > NC_002947/1539509‑1539655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |