| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1545648 | 57 (1.030) | 3 (0.060) | 3/248 | NT | 5.3% | coding (455/1548 nt) | ampG | muropeptide permease AmpG |
| ? | NC_002947 | = 1545699 | 53 (0.990) | coding (404/1548 nt) | ampG | muropeptide permease AmpG | |||||
GCCGGCCCAGGCCTTGTGCAGGTAGCTGAAGCCGGTAGAGCCGAACCACTCGGCGAAGAACAGGGCACCGGCCGTGGCGAGCAAGGCAGCCACCCGGTAGCCGGCCATGTAACTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1545530‑1545648‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGCCTTGCTCGCCACGGCCGGTGCCCTGTTCTTCGCCGAGTGGTTCGGCTCTACCGGCTTCAGCT < NC_002947/1545699‑1545553 GCCGGCCCAGGCCTTGTGCAGGTAGCTGAAGCCGGTAGAGCCGAACCACTCGGCGAAGAACAGGGCACCGGCCGTGGCGAGCAAGGCAGCCACCCGGTAGCCGGCCATGTAACTGGCT > 5:16026/1‑118GCCGGCCCAGGCCTTGTGCAGGTAGCTGAAGCCGGTAGAGCCGAACCACTCGGCGAAGAACAGGGCACCGGCCGTGGCGAGCAAGGCAGCCACCCGGTAGCCGGCCATGTAACTGGCT < 6:16026/118‑1 CGGCCCAGGCCTTGTGCAGGTAGCTGAAGCCGGTAGAGCCGAACCACTCGGCGAAGAACAGGGCACCGGCCGTGGCGAGCAAGGCAGCCACCCGGTAGCCGGCCATGTAACTGGCTGTCGACGCCTACCGCCTGGAAATCGCTGATGAC > 2:260768/1‑149 GGTAGAGCCGAACCACTCGGCGAAGAACAGGGCACCGGCCGTGGCGAGCAAGGCAGCCACCCGGTAGCCGGCCATGTAACTGGCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACA < 1:260768/149‑1 AGAGCCGAACCACTCGGCAAAGAACAGGGCACCGGCCGTGGCGAGCAAGGCAGCCACCCGGTAGCCGGCCATGTAACTGGCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAG < 2:122765/141‑1 GCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGCCTTGCTCGCCACGGCCGGTGCCCTGTTCTTCGCCGAGTGGTTCGGCTCTACCGGCTTCAG < 3:262605/149‑1 GCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGCCTTGCTCGCCACGGCCGGTGCCCTGTTCTTCGCCGAGTGGTTCGGCTCTACCGGCTTCA < 8:229785/148‑1 GCTGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTACCTTGCTCGCCACGGCCGGTGCCCTGTTCTTCGCCGAGTGGTTCGGCTCTACCGGCTTCA < 1:181137/148‑1 TGTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGCCTTGCTCGCCACGGCCGGTGCCCTGTTCTTCGCCGAGTGGTTCGGCTCTACCGGCTTCAGCT < 2:178695/149‑1 GCCGGCCCAGGCCTTGTGCAGGTAGCTGAAGCCGGTAGAGCCGAACCACTCGGCGAAGAACAGGGCACCGGCCGTGGCGAGCAAGGCAGCCACCCGGTAGCCGGCCATGTAACTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1545530‑1545648‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgTCGACGCCTACCGCCTGGAAATCGCTGATGACCAGCGCCAGGCCGCGCTCGCAGCCAGTTACATGGCCGGCTACCGGGTGGCTGCCTTGCTCGCCACGGCCGGTGCCCTGTTCTTCGCCGAGTGGTTCGGCTCTACCGGCTTCAGCT < NC_002947/1545699‑1545553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |