| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1578132 | 48 (0.870) | 3 (0.060) | 3/248 | NT | 5.7% | coding (116/1455 nt) | ttgC | efflux pump outer membrane protein TtgC |
| ? | NC_002947 | = 1578145 | 53 (0.990) | coding (103/1455 nt) | ttgC | efflux pump outer membrane protein TtgC | |||||
GAGGTTCAACGCCGCGACGCGCAGGTCGCGGTTATTGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1577990‑1578132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagTGGCCGCAAGGCCCTGCTTACTCGCCGACGCAATCGGCGGATGTTGCCGCTGCTGAACAGGGCTGGCGCCAGTTCTTCCACGACCCGGCGCTGCAACAGCTGATCCAGACCTCGCTGGTCAATAACCGCGACCTGCGCGTCGCGG < NC_002947/1578145‑1578001 GAGGTTCAACGCCGCGACGCGCAGGTCGCGGTTATTGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAG < 7:120477/143‑1GAGGTTCAACGCCGCGACGCGCAGGTCGCGGTTATTGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAG > 8:120477/1‑143 TGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAG > 7:146678/1‑108 TGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAG < 8:146678/108‑1 TTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGTGGCCGCAAGGCCCTGCTTACTC < 3:8381/106‑1 CCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGTGGCCGCAAGGCCCTGCTTAC < 3:196415/74‑1 CCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGTGGCCGCAAGGCCCTGCTTAC > 4:196415/1‑74 GCAGTGGCCGCAAGGCCCTGCTTACTCGCCGACGCAATCGGCGGATGTTGCCGCTGCTGAACAGGGCTGGCGCCAGTTCTTCCACGACCCGGCGCTGCAACAGCTGATCCAGACCTCGCTGGTCAATAACCGCGACGCGCAGGTCGCGG < 7:196446/149‑1 GAGGTTCAACGCCGCGACGCGCAGGTCGCGGTTATTGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1577990‑1578132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagTGGCCGCAAGGCCCTGCTTACTCGCCGACGCAATCGGCGGATGTTGCCGCTGCTGAACAGGGCTGGCGCCAGTTCTTCCACGACCCGGCGCTGCAACAGCTGATCCAGACCTCGCTGGTCAATAACCGCGACCTGCGCGTCGCGG < NC_002947/1578145‑1578001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |