New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1578132	48 (0.870)	3 (0.060)	3/248	NT	5.7%	coding (116/1455 nt)	ttgC	efflux pump outer membrane protein TtgC
	?	NC_002947	= 1578145	53 (0.990)					coding (103/1455 nt)	ttgC	efflux pump outer membrane protein TtgC

CCGCGACGCGCAGGTCGCGGTTATTGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGTGGATTTTCAGGGGTGACGT  >  NC_002947/1578001‑1578284                                                                                                                                                 |                                                                                                                                            ccgcGACCTGCGCGTCGCGGTTATTGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCActgc                                                                                                                                         <  7:196446‑M2/149‑5 (MQ=255)                 gcgGTTATTGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCTAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCt                                                                                                                         >  2:329442/1‑149 (MQ=255)                          gACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCggg                                                                                                                    >  2:102001/1‑145 (MQ=255)                          gACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCggg                                                                                                                    <  1:102001/145‑1 (MQ=255)                            ccAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTgg                                                                                                              >  4:146717/1‑149 (MQ=255)                            ccAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAACCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTgg                                                                                                              <  2:74509/149‑1 (MQ=255)                                cGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGt                                                                                                          <  3:109783/149‑1 (MQ=255)                                    gTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAgg                                                                                                      >  3:180265/1‑149 (MQ=255)                                         gATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAggg                                                                                                     <  8:9807/145‑1 (MQ=255)                                         gATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAggg                                                                                                     >  7:9807/1‑145 (MQ=255)                                           tCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGc                                                                                               >  5:19452/1‑149 (MQ=255)                                              gCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGag                                                                                            >  8:179416/1‑149 (MQ=255)                                               cTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGag                                                                                            >  6:296841/1‑148 (MQ=255)                                                  ttGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTTGTCAGCCGCGGCAACATCCGCCGATTGCGTCGGGGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGagcagc                                                                                        <  3:256705/149‑1 (MQ=255)                                                  ttGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGagca                                                                                          <  7:179416/147‑1 (MQ=255)                                                    gCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCggg                                                                                                                    <  3:14577/119‑1 (MQ=255)                                                    gCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCggg                                                                                                                    >  4:14577/1‑119 (MQ=255)                                                       gcgcCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAgccgcc                                                                                    >  7:193230/1‑148 (MQ=255)                                                            gggTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAAt                                                                              <  3:309519/149‑1 (MQ=255)                                                               tCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCGGGGATCAGCGAGCAGCCGCCAAGAATGa                                                                            >  5:321042/1‑148 (MQ=255)                                                               tCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGaa                                                                           <  8:196446/149‑1 (MQ=255)                                                               tCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGa                                                                            >  4:213355/1‑148 (MQ=255)                                                                cGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGaaa                                                                          <  6:19452/149‑1 (MQ=255)                                                                cGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGaaa                                                                          <  4:100501/149‑1 (MQ=255)                                                                   ggAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATACGCCGATTGCTTCGGCGACTAAGCAGTGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGTTCTGGTAGTAAGGGATCAGCGAGCATCCGCCAAGAATGaaa                                                                          >  2:291459/1‑146 (MQ=255)                                                                   ggAAGAACTGGCGCAAGCCCTGTTCAGCAGCGGCAACATCCTCCGATTGCCTCGGCGAGTAAGCATGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCTCCAAGAATGaaa                                                                          <  1:291459/146‑1 (MQ=255)                                                                      agaaCTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGtt                                                                    <  3:146717/149‑1 (MQ=255)                                                                      agaaCTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGtt                                                                    <  3:299921/149‑1 (MQ=255)                                                                               gcCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAgg                                                           >  2:9339/1‑149 (MQ=255)                                                                                       tGTTCAGCAGCGGCAACATCCGCCGATTGCCTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGacaaca                                                    >  1:33783/1‑148 (MQ=255)                                                                                        gTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGacaaca                                                    >  6:92214/1‑147 (MQ=255)                                                                                            agcagcGTCAACATCCGCCGATTGCTTGGGCGAGTAAGCAGGTCCTTGCGGCGACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGAc                                               <  8:318260/148‑1 (MQ=255)                                                                                              cagcGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTg                                            <  5:78515/149‑1 (MQ=255)                                                                                                gcGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCaa                                                                                  <  1:301418/109‑1 (MQ=255)                                                                                                gcGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCaa                                                                                  >  2:301418/1‑109 (MQ=255)                                                                                                gcGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGt                                          <  1:9339/149‑1 (MQ=255)                                                                                                    cAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGcc                                                              <  8:260633/125‑1 (MQ=255)                                                                                                    cAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGcc                                                              >  7:260633/1‑125 (MQ=255)                                                                                                       cATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGt                                          <  5:60428/142‑1 (MQ=255)                                                                                                       cATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGt                                          >  6:60428/1‑142 (MQ=255)                                                                                                           cgccgATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGc                               >  6:127911/1‑149 (MQ=255)                                                                                                           cgccgATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGc                               <  5:92214/149‑1 (MQ=255)                                                                                                               gATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCa                           <  4:180265/149‑1 (MQ=255)                                                                                                                           gAGTAAGCAGGGCCTTGCGGCCActgcttactcgccgacgcaatcggcggatgttgccgctgctgaacagggctggcgccagttcttccacgacccggcgctgcaa                                                          <  3:8381‑M2/106‑84 (MQ=255)                                                                                                                           gAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGt                     >  7:111268/1‑143 (MQ=255)                                                                                                                           gAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGt                     <  8:111268/143‑1 (MQ=255)                                                                                                                             gTAAGCAGGGCCTTGCGGCCActgcttactcgccgacgcaatcggcggatgttgccgctgctgaacagggctgg                                                                                        <  3:196415‑M2/74‑54 (MQ=255)                                                                                                                             gTAAGCAGGGCCTTGCGGCCActgcttactcgccgacgcaatcggcggatgttgccgctgctgaacagggctgg                                                                                        >  4:196415‑M2/1‑21 (MQ=255)                                                                                                                             gTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGTGGATTTTc             <  8:193230/149‑1 (MQ=255)                                                                                                                                aGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGTGGATTTTCAgg          <  1:329442/149‑1 (MQ=255)                                                                                                                                 gCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGTGGATTTTCAggg         <  3:213355/149‑1 (MQ=255)                                                                                                                                   aGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGTGGATTTTCAGGGGt       >  5:311994/1‑149 (MQ=255)                                                                                                                                     ggCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGTGGATTTTCAGGGGTGa     >  5:163874/1‑149 (MQ=255)                                                                                                                                       ccTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGTGGATTTTCAGGGGTGACg   >  4:178484/1‑149 (MQ=255)                                                                                                                                        cTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGTGGATTTTCAGGGGTGACGt  <  5:296841/149‑1 (MQ=255)                                                                                                                                         ttGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACaaa                                                  >  6:113152/1‑100 (MQ=255)                                                                                                                                         ttGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACaaa                                                  <  5:113152/100‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                            CCGCGACGCGCAGGTCGCGGTTATTGACCAGCGAGGTCTGGATCAGCTGTTGCAGCGCCGGGTCGTGGAAGAACTGGCGCCAGCCCTGTTCAGCAGCGGCAACATCCGCCGATTGCGTCGGCGAGTAAGCAGGGCCTTGCGGCCACTGCGCAGCCACCGGCGCCTCCGGGGTCTGGTAGTCAGGGATCAGCGAGCAGCCGCCAAGAATGAAAGCGGTTACCGCCAGGGACAACAAAGACTTGGTCATTGCCCAGCCTCATAACGTGGATTTTCAGGGGTGACGT  >  NC_002947/1578001‑1578284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.