New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1886721	57 (1.030)	3 (0.060)	3/242	NT	5.1%	coding (1388/1488 nt)	rmuC	DNA recombination limiting inversions protein
	?	NC_002947	= 1886755	57 (1.090)					coding (1422/1488 nt)	rmuC	DNA recombination limiting inversions protein

GACAAGTTCGTGCTGTTCATCCAGGACCTGGACGAACTGGGCAGCCGCTTGCAGCAGGTGGACAAGGCTTATGCGGCAGCGCGCAACAAGCTGTGCGAAGGGCGTGGCAACCTGGTTAGCCGTAGCGAGCAGCTTAAGCTGCTGGGCGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1886570‑1886721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccgCTCCAGCAGGTCTGCCGGCAAGCTCTTGCTGGCACGGGCGCCCAGCAGCTTAAGCTGCTCGCTACGGCTAACCAGGTTGCCACGCCCTTCGCACAGCTTGTTGCGCGCTGCCGCATAAGCCTTGTCCACCTGCTGCAAGCGGCTGCC  <  NC_002947/1886755‑1886609                                                                                                                                                                                                                                                                                                             GACAAGTTCGTGCTGTTCATCCAGGACCTGGACGAACTGGGCAGCCGCTTGCAGCAGGTGGACAAGGCTTATGCGGCAGCGCGCAACAAGCTGTGCGAAGGGCGTGGCAACCTGGTTAGCCGTAGCGAGCAGCTTAAGCTGCTGGGCGC                                                                                                                                                        >  4:230593/1‑149                                             CCGCTTGCAGCAGGTGGACAAGGCTTATGCGGCAGCGCGCAACAAGCTGTGCGAAGGGCGTGGCAACCTGGTTAGCCGTAGCGAGCAGCTTAAGCTGCTGGGCGCCCGCTCCAGCAGGTCTGCCGGCAAGCTCTTGCTGGCACGGGCGC                                                                                                            <  3:317754/149‑1                                                     AGCAGGTGGACAAGGCTTATGCGGCAGCGCGCAACAAGCTGTGCGAAGGGCGTGGCAACCTGGTTAGCCGTAGCGAGCAGCTTAAGCTGCTGGGCGCCCGCTCCAGCAGGTCTGCCGGCAAGCTCTTGCTGGCACGGGCG                                                                                                             <  7:92358/140‑1                                                     AGCAGGTGGACAAGGCTTATGCGGCAGCGCGCAACAAGCTGTGCGAAGGGCGTGGCAACCTGGTTAGCCGTAGCGAGCAGCTTAAGCTGCTGGGCGCCCGCTCCAGCAGGTCTGCCGGCAAGCTCTTGCTGGCACGGGCG                                                                                                             >  8:92358/1‑140                                                                                                                                                    GCCCGCTCCAGCAGGTCTGCCGGCAAGCTCTTGCTGGCACGGGCGCCCAGCAGCTTAAGCTGCTCGCTACGGCTAACCAGGTTGCCACGCCCTTCGCACAGCTTGTTGCGCGCTGCCGCATAAGCCTTGTCCACCTGCTGCAAGCGGCT     >  6:244136/1‑149                                                                                                                                                       CGCTCCAGCAGGTCTGCCGGCAAGCTCTTGCTGGCACGGGCGCCCAGCAGCTTAAGCTGCTCGCTACGGCTAACCAGGTTGCCACGCCCTTCGCACAGCTTGTTGCGCGCTGCCGCATAAGCCTTGTCCACCTGCTGCAAGCGGCTGCC  >  4:118042/1‑149                                                                                                                                                                                                                                                                                                             GACAAGTTCGTGCTGTTCATCCAGGACCTGGACGAACTGGGCAGCCGCTTGCAGCAGGTGGACAAGGCTTATGCGGCAGCGCGCAACAAGCTGTGCGAAGGGCGTGGCAACCTGGTTAGCCGTAGCGAGCAGCTTAAGCTGCTGGGCGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1886570‑1886721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcccgCTCCAGCAGGTCTGCCGGCAAGCTCTTGCTGGCACGGGCGCCCAGCAGCTTAAGCTGCTCGCTACGGCTAACCAGGTTGCCACGCCCTTCGCACAGCTTGTTGCGCGCTGCCGCATAAGCCTTGTCCACCTGCTGCAAGCGGCTGCC  <  NC_002947/1886755‑1886609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.