| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1901431 = | 44 (0.790) | 4 (0.080) | 4/244 | NT | 7.8% | coding (1982/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
| ? | NC_002947 | 1901478 = | 52 (0.990) | coding (2029/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase | |||||
TACGGCGCAGTGCTTGAAGGCAGGCTGCAGCGACAGCGGGTCGACCGCATCGCAGGTCGCGGCATTGATCGCCAATTGCTCGCCGATCAGGTCGTTCCAGTGAAACGGCGCAAAGCAGTTGCCCGGCATGACCCGGTCACTGATGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1901582‑1901431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGCACTGCGCCGTAGCCCTGGAGCGGGTC > NC_002947/1901478‑1901597 TACGGCGCAGTGCTTGAAGGCAGGCTGCAGCGACAGCGGGTCGACCGCATCGCAGGTCGCGGCATTGATCGCCAATTGCTCGCCGATCAGGTCGTTCCAGTGAAACGGCGCAAAGCAGTTGCCCGGCATGACCCGGTCACTGATGCGCG > 7:60070/1‑149 CGGCGCAGTGCTTGAAGGCAGGCTGCAGCGACAGCGGGTCGACCGCATCGCAGGTCGCGGCATTGATCGCCAATTGCTCGCCGATCAGGTCGTTCCAGTGAAACGGCGCAAAGCAGTTGCCCGGCATGACCCGGTCACTGATGCGCGCC < 3:333996/149‑1 GTGAAACGGCGCAAAGCAGTTGCCCGGCATGACCCGGTCACTGATGCGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGC < 3:318602/147‑1 GTGAAACGGCGCAAAGCAGTTGCCCGGCATGACCCGGTCACTGATGCGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGC > 4:318602/1‑147 AACGGCGCAAAGCAGTTGCCCGGCATGACCCGGTCACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGCACTGCG > 1:191887/1‑149 GCGCAAAGCAGTTGCCCGGCATGACCCGGTCACTGATGCGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGCACTGCGCCG > 5:292492/1‑148 CGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGCACTGCGCCGTAGCCCTGGAGCGGGTC < 7:335207/125‑1 CGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGCACTGCGCCGTAGCCCTGGAGCGGGTC > 8:335207/1‑125 CCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGCACTGCGCCGTAGCCCTGGAGCGG < 3:324088/120‑1 CCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGCACTGCGCCGTAGCCCTGGAGCGG > 4:324088/1‑120 TACGGCGCAGTGCTTGAAGGCAGGCTGCAGCGACAGCGGGTCGACCGCATCGCAGGTCGCGGCATTGATCGCCAATTGCTCGCCGATCAGGTCGTTCCAGTGAAACGGCGCAAAGCAGTTGCCCGGCATGACCCGGTCACTGATGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1901582‑1901431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAGCACTGCGCCGTAGCCCTGGAGCGGGTC > NC_002947/1901478‑1901597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |