New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1901431 =	44 (0.790)	4 (0.080)	4/244	NT	7.8%	coding (1982/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1901478 =	52 (0.990)					coding (2029/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase

ACGTTGACCAAGACCGGCAAGGTGCCGGCGCTGAACAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAG  >  NC_002947/1901283‑1901570                                                                                                                                                      |                                                                                                                                            acGTTGACCAAGACCGGCAAGGTGCCGGCGCTGAACAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGcc                                                                                                                                             <  5:180237/149‑1 (MQ=255)   gTTGACCAAGACCGGCAAGGTGCCGGCGCTGAACAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCgg                                                                                                                                           <  2:330911/149‑1 (MQ=255)         cAAGACCGGCAAGGTGCCGGCGCTGAACAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCa                                                                                                                                     >  3:227462/1‑149 (MQ=255)          aaGACCGGCAAGGTGCCGGCGCTGAACAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCAt                                                                                                                                    <  2:230816/149‑1 (MQ=255)              ccGGCAAGGTGCCGGCGCTGAACAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAg                                                                                                                                 <  2:73201/148‑1 (MQ=255)                           ggCGCTGAACAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCCGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGc                                                                                                                   <  4:306727/149‑1 (MQ=255)                              gacccgctccagggctacggcgcagtgcttgaaggcaggctgcagcgacagcgggtcgaccgcatcgcaggtcgcggcattgatcgccaattgctcgccgatcaggtcgttccagtgaaaCGgcg                                                                                                                                         >  8:335207‑M1/121‑125 (MQ=255)                              gacccgctccagggctacggcgcagtgcttgaaggcaggctgcagcgacagcgggtcgaccgcatcgcaggtcgcggcattgatcgccaattgctcgccgatcaggtcgttccagtgaaaCGgcg                                                                                                                                         <  7:335207‑M1/5‑1 (MQ=255)                                 ccgctccagggctacggcgcagtgcttgaaggcaggctgcagcgacagcgggtcgaccgcatcgcaggtcgcggcattgatcgccaattgctcgccgatcaggtcgttccagtgaaaCgg                                                                                                                                           <  3:324088‑M1/3‑1 (MQ=255)                                 ccgctccagggctacggcgcagtgcttgaaggcaggctgcagcgacagcgggtcgaccgcatcgcaggtcgcggcattgatcgccaattgctcgccgatcaggtcgttccagtgaaaCgg                                                                                                                                           >  4:324088‑M1/118‑120 (MQ=255)                                   aCAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAAc                                                                                                           >  7:45912/1‑149 (MQ=255)                                    cAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACt                                                                                                          >  8:314584/1‑149 (MQ=255)                                           gAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCttt                                                                                                     <  2:95880/147‑1 (MQ=255)                                               cggcgcagtgcttgaaggcaggctgcagcgacagcgggtcgaccgcatcgcaggtcgcggcattgatcgccaattgctcgccgatcaggtcgttccagtgaaaCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTgcgc                                                                                                 >  5:292492‑M1/104‑148 (MQ=255)                                               ccGGCCCCTACCTTGAGATTCACCCCGAGGTATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGcc                                                                                                >  1:31937/1‑149 (MQ=255)                                                  gCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGttt                                                                                            <  6:35686/149‑1 (MQ=255)                                                  cgcagtgcttgaaggcaggctgcagcgacagcgggtcgaccgcatcgcaggtcgcggcattgatcgccaattgctcgccgatcaggtcgttccagtgaaaCGGCGCAAAGCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGtt                                                                                             >  1:191887‑M1/101‑149 (MQ=255)                                                    cccTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCa                                                                                          >  6:4373/1‑149 (MQ=255)                                                     ccTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGcc                                                                                                                  >  5:290762/1‑124 (MQ=255)                                                     ccTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGcc                                                                                                                  <  6:290762/124‑1 (MQ=255)                                                        gcttgaaggcaggctgcagcgacagcgggtcgaccgcatcgcaggtcgcggcattgatcgccaattgctcgccgatcaggtcgttccagtgaaaCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCAc                                                                                         >  4:318602‑M1/95‑147 (MQ=255)                                                        gcttgaaggcaggctgcagcgacagcgggtcgaccgcatcgcaggtcgcggcattgatcgccaattgctcgccgatcaggtcgttccagtgaaaCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCAc                                                                                         <  3:318602‑M1/53‑1 (MQ=255)                                                           ttGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAAc                                                                                   >  3:53150/1‑149 (MQ=255)                                                            tGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAAc                                                                                   >  4:350911/1‑148 (MQ=255)                                                                  tCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGa                                                                            >  1:110457/1‑149 (MQ=255)                                                                    aCCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGttt                                                                                            >  6:257993/1‑131 (MQ=255)                                                                    aCCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGttt                                                                                            <  5:257993/131‑1 (MQ=255)                                                                      cccGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCgg                                                                        <  1:341544/149‑1 (MQ=255)                                                                       ccGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGc                                                                       <  8:67527/149‑1 (MQ=255)                                                                        cGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGc                                                                       >  1:172773/1‑148 (MQ=255)                                                                         gAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGa                                                                     <  5:106901/149‑1 (MQ=255)                                                                          aGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAg                                                                    <  8:45912/149‑1 (MQ=255)                                                                           gg‑ATGCCGCCCGGCTGGGTGTCACTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCAGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAg                                                                    >  2:34184/1‑148 (MQ=255)                                                                                  cgccCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTgg                                                             <  2:172773/149‑1 (MQ=255)                                                                                  cgccCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCAGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTgg                                                             >  3:175338/1‑149 (MQ=255)                                                                                   gccCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGc                                                            <  2:31937/149‑1 (MQ=255)                                                                                     ccGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATACCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGa                                                          >  3:187331/1‑149 (MQ=255)                                                                                             gtgtCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCa                                                                                          >  1:114121/1‑109 (MQ=255)                                                                                             gtgtCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCa                                                                                          <  2:114121/109‑1 (MQ=255)                                                                                              tgtCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATACCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCcg                                                 <  4:187331/149‑1 (MQ=255)                                                                                                  gCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGAc                                             <  2:110457/149‑1 (MQ=255)                                                                                                    tGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCt                                           >  7:320389/1‑149 (MQ=255)                                                                                                                   ggCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCgg                                                                                                                <  4:151702/65‑1 (MQ=255)                                                                                                                   ggCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCgg                                                                                                                >  3:151702/1‑65 (MQ=255)                                                                                                                     ccGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCg                          >  5:286045/1‑149 (MQ=255)                                                                                                                     ccGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCg                          >  2:8854/1‑149 (MQ=255)                                                                                                                      cGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGc                         <  7:314584/149‑1 (MQ=255)                                                                                                                         tcgctcgcGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGt                      <  4:308266/149‑1 (MQ=255)                                                                                                                            ctcgcGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGc                   <  5:4373/149‑1 (MQ=255)                                                                                                                               gcgcCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCt                  <  2:338042/147‑1 (MQ=255)                                                                                                                                       ggCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAgcctgcc        <  4:175338/149‑1 (MQ=255)                                                                                                                                        gCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAgcctgcct       >  3:276511/1‑149 (MQ=255)                                                                                                                                            gCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCaa   <  4:227462/149‑1 (MQ=255)                                                                                                                                              cGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAg  >  8:60070/1‑148 (MQ=255)                                                                                                                                                      |                                                                                                                                            ACGTTGACCAAGACCGGCAAGGTGCCGGCGCTGAACAAACTGGAGCCCGGCCCCTACCTTGAGATTCACCCCGAGG‑ATGCCGCCCGGCTGGGTGTCGCTGAAAAGGACCAGGTGGCCGTTCGCTCGCGCCGGGGGCAGGCCGTGTTGCCGGCGCGCATCAGTGACCGGGTCATGCCGGGCAACTGCTTTGCGCCGTTTCACTGGAACGACCTGATCGGCGAGCAATTGGCGATCAATGCCGCGACCTGCGATGCGGTCGACCCGCTGTCGCTGCAGCCTGCCTTCAAG  >  NC_002947/1901283‑1901570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.