| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1925703 = | 35 (0.630) | 4 (0.090) | 4/208 | NT | 12.6% | intergenic (‑2/+98) | PP_1725/PP_1726 | hypothetical protein/ABC transporter substrate‑binding protein |
| ? | NC_002947 | 1925768 = | 27 (0.600) | intergenic (‑67/+33) | PP_1725/PP_1726 | hypothetical protein/ABC transporter substrate‑binding protein | |||||
GAAGCCTGGGAAGCCACCTCGAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1925872‑1925703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTCTTGATCGGCTGGGCGGCAGCGTACTGGTCGTTGG > NC_002947/1925768‑1925913 GAAGCCTGGGAAGCCACCTCGAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGT < 8:40176/149‑1GAAGCCTGGGAAGCCACCTCGAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGT < 3:164703/149‑1 AGCCTGGGAAGCCACCTCGAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGTAG < 6:339823/149‑1 CTGGGAAGCCACCTCGAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTGCTACACAGGGATACGCGGTACATGTAGGAG > 1:338204/1‑149 GGAAGTCACCTAGAAGAAACTGACGTAGATGTGGCTGGAGCAGGTGATTATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGTAGGAGCGG < 4:19803/149‑1 gatGCCACCTCGAAGAAACTGCCGCAGATGTAGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGTAGGAGCGGG < 8:189344/146‑1 CCTCGAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGTAGGAGCGGGTTTACCC > 2:263715/1‑149 CCTCGAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGTAGGAGCGGGTTTACCC > 2:258964/1‑149 CTCGAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGTAGGAGCGGGTTTACCCG > 3:308301/1‑149 GAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACCCAGGGATACGCGATACATGTAGGAGCGGGTTTACCCGCG > 8:167628/1‑148 CGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGT < 1:333000/118‑1 CGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGT > 2:333000/1‑118 TAAACCCGCTCCTACACAGGGATACGCGATACATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGG > 4:193211/1‑149 CGCTCCTACACAGGGATACGCGATACATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCG < 4:81628/125‑1 CGCTCCTACACAGGGATACGCGATACATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCG > 3:81628/1‑125 GATACGCGATACATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTC < 3:193211/149‑1 TGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTCTTGATCGGCTGG < 7:6477/148‑1 ggtttGGGTTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCATGCTTCGGCATTCTTGATCGGCTG < 6:281041/138‑1 GGAGCGGGTTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGACGTGTCTTCCCAGGCTTCGGCATTCTTGATCGGCTGGagatc > 5:281041/1‑144 GAGCGGGTTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTCTTGATCGGCTGGGCGGCA < 6:242098/149‑1 GCGGGTTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTCTTGATCGGCTGGGCGGCAGC > 6:201357/1‑149 TTTACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTCTTGATCGGCTGGGCGGCAGCGTACT < 7:40176/149‑1 TACCCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTCTTGATCGGCTGGGCGGCAGCGTACTG < 5:201357/148‑1 CCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTCTTGATCGGCTGGGCGGCAGCGTACTGGTCG > 6:196695/1‑149 CCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAG > 5:157893/1‑107 CCGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAG < 6:157893/107‑1 GAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTCTTGATCGGCTGGGCGGCAGCGTACTGGTCGTTGG < 8:260896/149‑1 GAAGCCTGGGAAGCCACCTCGAAGAAACTGCCGCAGATGTGGCAGGAGCAGGTGATCATCGAGATGGAGTAAGGGGCTGGGCTTTGTAGTGCCTGATCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAGGGATACGCGATACATGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1925872‑1925703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCTTCGAGGTGGCTTCCCAGGCTTCGGCATTCTTGATCGGCTGGGCGGCAGCGTACTGGTCGTTGG > NC_002947/1925768‑1925913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |