| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1925703 = | 35 (0.630) | 4 (0.090) | 4/208 | NT | 12.6% | intergenic (‑2/+98) | PP_1725/PP_1726 | hypothetical protein/ABC transporter substrate‑binding protein |
| ? | NC_002947 | 1925768 = | 27 (0.600) | intergenic (‑67/+33) | PP_1725/PP_1726 | hypothetical protein/ABC transporter substrate‑binding protein | |||||
CGCGGTACAGCGCGGCGCGGTCGGCCTCGACGTAGGCGTGCAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCT > NC_002947/1925557‑1925850 | cgcgGTACAGCGCGGCGCGGTCGGCCTCGACGTAGGCGTGCAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTc < 6:66464/149‑1 (MQ=255)ccaacgaccagtacgctgccgcccagccgatcaagaatgccgaagcctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTc < 8:260896‑M1/3‑1 (MQ=255) gTACAGCGCGGCGCGGTCGGCCTCGACGTAGGCGTGCAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCgg < 2:102744/149‑1 (MQ=255) cgaccagtacgctgccgcccagccgatcaagaatgccgaagcctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCgg > 6:196695‑M1/143‑149 (MQ=255) aCAGCGCGGCGCGGTCGGCCTCGACGTAGGCGTGCAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTGGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCggg > 5:300766/1‑148 (MQ=255) cagtacgctgccgcccagccgatcaagaatgccgaagcctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTa < 5:201357‑M1/10‑1 (MQ=255) agtacgctgccgcccagccgatcaagaatgccgaagcctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTaaa < 7:40176‑M1/12‑1 (MQ=255) cgcggcgcggTCGGCCTCGACGTAGGCGTGCAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAAc < 6:272357/149‑1 (MQ=255) gctgccgcccagccgatcaagaatgccgaagcctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTAAACCCGc > 6:201357‑M1/133‑149 (MQ=255) tgccgcccagccgatcaagaatgccgaagcctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTAAACCCGCTc < 6:242098‑M1/19‑1 (MQ=255) gatctccagccgatcaagaatgccgaagcctgggaagacacgtcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTAAACCCGCTcc > 5:281041‑M1/130‑149 (MQ=255) ggCCTCGACGTAGGCGTGCAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACAt < 6:300766/149‑1 (MQ=255) ccagccgatcaagaatgccgaagcctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTAAACCCGCTCCTACa < 7:6477‑M1/24‑1 (MQ=255) cagccgatcaagaatgccgaagcatgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGgtaaacccaaacc < 6:281041‑M1/20‑6 (MQ=255) gaatgccgaagcctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATc < 3:193211‑M1/37‑1 (MQ=255) gCGTGCAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGc > 8:243383/1‑128 (MQ=255) gCGTGCAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGc < 7:243383/128‑1 (MQ=255) cAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCtgt < 7:261809/148‑1 (MQ=255) ctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCgg > 5:157893‑M1/101‑107 (MQ=255) ctgggaagccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCgg < 6:157893‑M1/7‑1 (MQ=255) ccacctcgaagaaactgccgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTa > 4:193211‑M1/93‑149 (MQ=255) tGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAAACCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGcc > 2:52950/1‑149 (MQ=255) cgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑g > 3:81628‑M1/75‑125 (MQ=255) cgcagatgtggcaggagcaggtgatcatcgagatggagtaaggggctgggctttgtagtgcctgatccggccctTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑g < 4:81628‑M1/51‑1 (MQ=255) aGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAAACCGCTACTACATGTATAGCGTATGCCAGTGTAGGATC‑GGGTTTAAAC‑‑GCGAAAAGGCCGGa > 7:167628/1‑148 (MQ=255) ttGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAAACCGCAACTAACTGTATGGCGTATACCAGTTTTAGAAC‑CGGTTTACAC‑‑CCCAAAAGGACGGAt > 5:341822/1‑147 (MQ=255) gAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCTAGTCATGAACCGCGTTGGCACCTTCGCGGGTTAAACCCCGCCTAAATGTTTAGCGTATGCCTGTGTATGAGC‑GGGGTTTACC‑‑GCGAAAGGGGCGGATAAgg > 1:263715/1‑149 (MQ=255) gAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCAAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAAACCCCAGCTAAATTTATAGCGTATACCTGTGTATGATC‑GGGTTTTAAC‑‑GCGAAAAGGGCGGATCacg > 1:258964/1‑147 (MQ=255) gCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATc < 1:359385/97‑1 (MQ=255) gCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATc > 2:359385/1‑97 (MQ=255) gCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCACGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCtgt < 4:23646/109‑1 (MQ=255) gCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCACGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCtgt > 3:23646/1‑109 (MQ=255) ccGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCCCGCCTAAATGTATGGCCTATACCTGGGTAGGAGC‑GGGTTTACCC‑‑GCCAAAGGGCCGGGTCAGGCAc > 4:68382/1‑148 (MQ=255) tCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTTAAACCCCTCCTACATTTTTAGGGTATACCGGTGTTGGAGC‑GGGGTTACCC‑‑GCGAAACGGCCGGATCAGGCAcgaa > 6:251674/1‑145 (MQ=255) gCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATcgcg < 1:282553/92‑1 (MQ=255) gCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATcgcg > 2:282553/1‑92 (MQ=255) cAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAAACCGCTCCTAAAAGTATAGCGTATACCTGTGTATGAGCGGGGTTTACCC‑‑‑CGAAAGGGCCGGATAAGGCAAAAAAAagccccgccc > 2:258946/1‑149 (MQ=255) ggATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTTAAACCCCTACTAAAATTATAGCGTATCCCGGTGTAGGTGC‑GGGTTTAACC‑‑CCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGccccg > 7:71406/1‑148 (MQ=255) gATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTTAAACCGCGCCTACAAGTATAGCGGATACCTTTGTTTGAGC‑GGGGTTTACC‑‑GCCAAAAGGCCGGGTCAGGCCCAAAAAACCCCAGccccg > 3:334279/1‑147 (MQ=255) gtTGCATGTTTTCTCCAGTCATGAACCGCGTTGTCACCTTCGCGGGTAAAACCGCTACTACATGTATAGCGTATACCTGTGTAGGAGC‑GGGTTTTCCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCAtctc > 1:48443/1‑148 (MQ=39) ttGCATGTTTTATCCAGTCATTACCCGCGTTGGAACCTTCGCGGGTAAACCCGCTCCTACCTTTAGCGCTTATCCCTGTGTAGTAGC‑GGGTTTACCC‑‑GCGAAAGGGCAGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCga < 2:287635/149‑1 (MQ=38) cATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGTTAAACCCGCTCCTAAATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCgatg < 8:71406/148‑1 (MQ=255) ttttCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCAc < 5:251674/149‑1 (MQ=255) tttGTCCAGTCATGCACCGCGTTGGCACGTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATGCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCAc < 4:221098/148‑1 (MQ=255) tttCTCCAGTCAGGACCCGCGTGGCCACCTTCGCGGGAAAACCCGCTCCAACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCAc < 4:334279/148‑1 (MQ=39) tcCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCAt < 1:275510/132‑1 (MQ=255) cAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCCTAGCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCt < 1:286531/149‑1 (MQ=255) aGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCCCTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCt < 1:258946/149‑1 (MQ=255) aaCCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTAAACCc‑‑gctcc > 6:344920/1‑77 (MQ=37) aaCCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTAAACCc‑‑gctcc < 5:344920/80‑4 (MQ=37) gcgTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATTTCGTATCCCTGTGTAGTAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGc < 6:341822/149‑1 (MQ=255) cTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTttct < 3:68382/149‑1 (MQ=255) | CGCGGTACAGCGCGGCGCGGTCGGCCTCGACGTAGGCGTGCAGGTGGCCCATCGCATGGTGGGCGACCTGATAGTTGAGGCCGTCGAGCAGGACCAGGATGACGTTGTGTTGCATGTTTTCTCCAGTCATGAACCGCGTTGGCACCTTCGCGGGTAAACCCGCTCCTACATGTATCGCGTATCCCTGTGTAGGAGC‑GGGTTTACCC‑‑GCGAAAGGGCCGGATCAGGCACTACAAAGCCCAGCCCCTTACTCCATCTCGATGATCACCTGCTCCTGCCACATCTGCGGCAGTTTCT > NC_002947/1925557‑1925850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |