| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2088717 = | 64 (1.160) | 4 (0.080) | 4/242 | NT | 6.1% | coding (735/1347 nt) | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase |
| ? | NC_002947 | 2088756 = | 62 (1.180) | coding (696/1347 nt) | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase | |||||
GCCGACAAGTACCACCAGTTGGCCAATCGCATCGATGAAACCCTGGCGTTCATGCGTGCCTGTGGCCTGGACAGTGCGCCGCAACTGCGCGAAACAAGCTTCTTCACGGCCCACGAAGCGCTGCTGCTGAACTATGAAGAAGCCTTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2088866‑2088717‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgtgGGCCGTGAAGAAGCTTGTTTCGCGCAGTTGCGGCGCACTGTCCAGGCCACAGGCACGCATGAACGCCAGGGTTTCATCGATGCGATTGGCCAACTGGTGGTACTTGTCGGCCAGCGCCGAGTTGGCGATGAAGTCCAGGTTCCACTT > NC_002947/2088756‑2088902 GCCGACAAGTACCACCAGTTGGCCAATCGCATCGATGAAACCCTGGCGTTCATGCGTGCCTGTGGCCTGGACAGTGCGCCGCAACTGCGCGAAACAAGCTTCTTCACGGCCCACGAAGCGCTGCTGCTGAACTATGAAGAAGCCTTCGT > 8:256009/1‑149 CCACGAAGCGCTGCTGCTGAACTATGAAGAAGCCTTCGTGGGCCGTGAAGAAGCTTGTTTCGCGCAGTTGCGGCGCACTGTCCAGGCCACAGGCACGCATGAAC < 1:224797/104‑1 CCACGAAGCGCTGCTGCTGAACTATGAAGAAGCCTTCGTGGGCCGTGAAGAAGCTTGTTTCGCGCAGTTGCGGCGCACTGTCCAGGCCACAGGCACGCATGAAC > 2:224797/1‑104 ACGAAGCGCTGCTGCTGAACTATGAAGAAGCCTTCGTGGGCCGTGAAGAAGCTTGTTTCGCGCAGTTGCGGCGCACTGTCCAGGCCACAGGCACGCATGAACGCCAGGGTTTCATCGATGCGATTGGCCAACTGGTGGTACTTGTCG < 7:139835/147‑1 ACGAAGCGCTGCTGCTGAACTATGAAGAAGCCTTCGTGGGCCGTGAAGAAGCTTGTTTCGCGCAGTTGCGGCGCACTGTCCAGGCCACAGGCACGCATGAACGCCAGGGTTTCATCGATGCGATTGGCCAACTGGTGGTACTTGTCG > 8:139835/1‑147 CTTCGTGGGCCGTGAAGAAGCTTGTTTCGCGCAGTTGCGGCGCACTGTCCAGGCCACAGGCACGCATGAACGCCAGGGTTTCATCGATGCGATTGGCCAACTGGTGGTACTTGTCGGCCAGCGCCGAGTTGGCGATGAAGTCCAGGTTC < 3:78948/149‑1 TGGGCCGTGAAGAAGCTTGTTTCGCGCAGTTGCGGCGCACTGTCCAGGCCACAGGCACGCATGAACGCCAGGGTTTCATCGATGCGATTGGCCAACTGGTGGTACTTGTCGGCCAGCGCCGAGTTGGCGATGAAGTCCAGGTTCCACTT > 8:98811/1‑149 GCCGACAAGTACCACCAGTTGGCCAATCGCATCGATGAAACCCTGGCGTTCATGCGTGCCTGTGGCCTGGACAGTGCGCCGCAACTGCGCGAAACAAGCTTCTTCACGGCCCACGAAGCGCTGCTGCTGAACTATGAAGAAGCCTTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2088866‑2088717‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgtgGGCCGTGAAGAAGCTTGTTTCGCGCAGTTGCGGCGCACTGTCCAGGCCACAGGCACGCATGAACGCCAGGGTTTCATCGATGCGATTGGCCAACTGGTGGTACTTGTCGGCCAGCGCCGAGTTGGCGATGAAGTCCAGGTTCCACTT > NC_002947/2088756‑2088902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |