| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2540513 = | 49 (0.880) | 3 (0.060) | 3/248 | NT | 5.6% | coding (260/534 nt) | PP_2232 | XRE family transcriptional regulator |
| ? | NC_002947 | 2540544 = | 54 (1.010) | coding (291/534 nt) | PP_2232 | XRE family transcriptional regulator | |||||
GCGCCTTGCCGGGCTGGTGCCCAGCAACACCGCTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2540550‑2540513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTATCACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAGCT > NC_002947/2540544‑2540654 GCGCCTTGCCGGGCTGGTGCCAAGCAACACCGCTCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTATCACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAGCT > 6:331005/1‑149 CTTGCCGGGCTGGTGCCCAGCAACACCGCTCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTATCACAGTGAG > 1:72043/1‑95 CTTGCCGGGCTGGTGCCCAGCAACACCGCTCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTATCACAGTGAG < 2:72043/95‑1 GCGCCTTGCCGGGCTGGTGCCCAGCAACACCGCTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2540550‑2540513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTATCACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAGCT > NC_002947/2540544‑2540654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |