New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2540513 =	49 (0.880)	3 (0.060)	3/248	NT	5.6%	coding (260/534 nt)	PP_2232	XRE family transcriptional regulator
	?	NC_002947	2540544 =	54 (1.010)					coding (291/534 nt)	PP_2232	XRE family transcriptional regulator

GGCGGGCGAGAAGAATGTCAGCCTGACCACATTGGACCTGATTGCCGAAGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAGCTGACGC  >  NC_002947/2540367‑2540659                                                                                                                                                    |                                                                                                                                                    ggcgggcgAGAAGAATGTCAGCCTGACCACATTGGACCTGATTGCCGAAGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGcc                                                                                                                                                   <  4:100955/149‑1 (MQ=255)       cgAGAAGAATGTCAGCCTGACCACATTGGACCTGATTGCCGAAGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCgg                                                                                                                                             >  6:369265/1‑149 (MQ=255)        gagaAGAATGTCAGCCTGACCACATTGGACCTGATTGCCGAAGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGgt                                                                                                                                            <  4:240453/149‑1 (MQ=255)               aTGTCAGCCTGACCACATTGGACCTGATTGCCGAAGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCt                                                                                                                                      <  6:115883/148‑1 (MQ=255)                                    aCCTGATTGCCGAAGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGgcgc                                                                                                                >  2:57016/1‑149 (MQ=255)                                     agctgcccatcgatcacataaatctgctcgctccagccttcggcgtcggcctcactgtgatagcactcccccggtgccagggtccattcccaaagttccacctcgcgccttGCCGAGCGGTGTTGCTTGGCACCAGCCCGGCAAGgcgc                                                                                                                >  6:331005‑M1/112‑149 (MQ=255)                                        gATTGCCGAAGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAgg                                                                                                            >  3:217991/1‑149 (MQ=255)                                              cGAAGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAAc                                                                                                      >  2:185581/1‑149 (MQ=255)                                                 aGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACttt                                                                                                   <  4:217991/149‑1 (MQ=255)                                                          cGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGa                                                                                          >  6:132621/1‑149 (MQ=255)                                                             ggCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGAACCAGCCCGGCAAGGCGCGAGGTCGAACTTTGGGAATGGAccc                                                                                       >  3:135974/1‑149 (MQ=255)                                                               cTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGCACCCTg                                                                                     <  4:82045/149‑1 (MQ=255)                                                                tttCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAg                                                                                                                             <  8:175708/108‑1 (MQ=255)                                                                tttCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAg                                                                                                                             >  7:175708/1‑108 (MQ=255)                                                                    aGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCAc                                                                                 <  2:268414/148‑1 (MQ=255)                                                                    aGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGAGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCAcc                                                                                >  1:325905/1‑149 (MQ=255)                                                                     gCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCg                                                                               >  6:346813/1‑149 (MQ=255)                                                                      cACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCgg                                                                              >  4:227604/1‑149 (MQ=255)                                                                       aCCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCggg                                                                             >  2:304053/1‑149 (MQ=255)                                                                        cccTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGgtgt                                                                                                                                          <  7:171929/87‑1 (MQ=255)                                                                        cccTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGgtgt                                                                                                                                          >  8:171929/1‑87 (MQ=255)                                                                         ccTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTg                                                                                                  <  3:118810/126‑1 (MQ=255)                                                                         ccTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTg                                                                                                  >  4:118810/1‑126 (MQ=255)                                                                              tCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGgc                                                                                                                  <  3:333305/105‑1 (MQ=255)                                                                              tCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGgc                                                                                                                  >  4:333305/1‑105 (MQ=255)                                                                              tCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGt                                                                        <  3:220881/147‑1 (MQ=255)                                                                              tCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGt                                                                        >  4:220881/1‑147 (MQ=255)                                                                                 aGGCGGCACTCCTGCGCGACCCCGGGCGTATTGAAGAGCTGGCGTGGGCCTCTAGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTa                                                                    <  1:294671/149‑1 (MQ=255)                                                                                   gcgcCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑ca                                                                >  6:153178/1‑149 (MQ=255)                                                                                     gcCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAtga                                                                 >  4:57117/1‑145 (MQ=255)                                                                                       ctcactgtgatagcactcccccggtgccagggtccattcccaaagttccacctcgcgccttGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAg                                                                                                                    >  1:72043‑M1/62‑95 (MQ=255)                                                                                       ctcactgtgatagcactcccccggtgccagggtccattcccaaagttccacctcgcgccttGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAg                                                                                                                    <  2:72043‑M1/34‑1 (MQ=255)                                                                                         gACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGa                                                          <  5:153178/149‑1 (MQ=255)                                                                                            cTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGc                                                       >  3:11011/1‑149 (MQ=255)                                                                                                     cccGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCg                                               >  2:132517/1‑148 (MQ=255)                                                                                                      ccGGGCGGATTGAAGAGGTGGGGTGGG‑CTGGCGAAGACGCGCTGAGCCGTGCGGTGTTGCTGGGCACCAGGCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGaa                                             <  2:325905/149‑1 (MQ=255)                                                                                                       cGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAg                                            <  4:11011/149‑1 (MQ=255)                                                                                                             cATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTATCCACAGTGAGGCCGACGCCGAAGGCTgg                                       <  1:185581/149‑1 (MQ=255)                                                                                                              aTTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGgag                                     >  8:309713/1‑149 (MQ=255)                                                                                                                  aaGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGgagcga                                  <  7:309713/148‑1 (MQ=255)                                                                                                                     agCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTTGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGCGGCCGACGCCGAAGGCTGGAGCGAGCAg                              <  4:135974/149‑1 (MQ=255)                                                                                                                       cTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGAt                            >  1:351908/1‑149 (MQ=255)                                                                                                                          gCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGAttt                          <  2:351908/148‑1 (MQ=255)                                                                                                                          gCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGAtt                           <  3:227604/147‑1 (MQ=255)                                                                                                                             tGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTAtgt                      <  1:304053/149‑1 (MQ=255)                                                                                                                                    ggCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGa                >  4:243578/1‑149 (MQ=255)                                                                                                                                     gCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGAt               >  6:31597/1‑149 (MQ=255)                                                                                                                                       catcacCCGCAGAGCCGAGCGGTGTTGCTGGCCACCAGCCCGGCAATGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCTGGGGa                                                                          <  4:155720/86‑1 (MQ=255)                                                                                                                                           acCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAg         <  5:31597/149‑1 (MQ=255)                                                                                                                                             ccGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGCAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCacat       >  4:65619/1‑146 (MQ=255)                                                                                                                                             ccGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAGCt       >  7:118358/1‑149 (MQ=255)                                                                                                                                             ccGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAGCt       <  1:132517/149‑1 (MQ=255)                                                                                                                                              cGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAGCt       >  3:49475/1‑148 (MQ=255)                                                                                                                                                  gagCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAGCTGACGc  >  2:211978/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GGCGGGCGAGAAGAATGTCAGCCTGACCACATTGGACCTGATTGCCGAAGCCTTGGGCGTGGCTTTCAGCACCCTGATCCAGGCGCCAGACCTGCGCGACCCCGGGCGCATTGAAGAGCTGGCGTGGG‑CTGGCGAACACCCGCAGAGCCGAGCGGTGTTGCTGGGCACCAGCCCGGCAAGGCGCGAGGTGGAACTTTGGGAATGGACCCTGGCACCGGGGGAGTGCTAT‑CACAGTGAGGCCGACGCCGAAGGCTGGAGCGAGCAGATTTATGTGATCGATGGGCAGCTGACGC  >  NC_002947/2540367‑2540659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.