| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2736562 = | 44 (0.790) | 4 (0.080) | 4/240 | NT | 8.4% | coding (3460/4422 nt) | PP_2394 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | 2736606 = | 46 (0.890) | coding (3504/4422 nt) | PP_2394 | leucine‑rich repeat‑containing protein | |||||
GGCAACGCATCCAGAATACGCAACCGGTAAGGCACGCGACTGGCCTCAAGCAAATGCCAGGTTGAAACCCCGTCATGCGCGCCTTCCAGCGGATTGCCGGAAAGCTCGACCCTGCCCGAACGCCACAACTGCGACTGATGAAAACCCTCGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2736716‑2736562‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggcagGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGTTGCGTATTCTGGATGCGTTGCCTGGCGAACGTCGAGATGAAATGGCTGCACTGTG > NC_002947/2736606‑2736749 GGCAACGCATCCAGAATACGCAACCGGTAAGGCACGCGACTGGCCTCAAGCAAATGCCAGGTTGAAACCCCGTCATGCGCGCCTTCCAGCGGATTGCCGGAAAGCTCGACCCTGCCCGAACGCCACAACTGCGACTGATGAAAACCCTC < 3:18025/149‑1GGCAACGCATCCAGAATACGCAACCGGTAAGGCACGCGACTGGCCTCAAGCAAATGCCAGGTTGAAACCCCGTCATGCGCGCCTTCCAGCGGATTGCCGGAAAGCTCGACCCTGCCCGAACGCCACAACTGCGACTGATGAAAACCCTC < 7:208447/149‑1 GCAACGCATACAGAATACCCAACCGGTAAGGCACGCGACTGGCCTCAAGCAAATGCCAGGTTGAAACCCCGTCATTCGCGCCTTCCAGCGGATTGCCGGAAAGCTCGACCCTGCCCGAACTCCACAACTGCGACTGATGAAAACCCTCG < 7:225701/149‑1 AACGCATCCAGAATACGCAACCGGTAAGGCACGCGACTGGCCTCAAGCAAATGCCAGGTTGAAACCCCGTCATGCGCGCCTTCCAGCGGATTGCCGGAAAGCTCGACCCTGCCCGAACGCCACAACTGCGACTGATGAAAACCCTCGGG < 3:341266/149‑1 CCCTGCCCGAACGCCACAACTGCGACTGATGAAAACCCTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGTTGCGTATTCTGGAT > 1:155435/1‑149 CCTGCCCGAACGCCACAACTGCGACTGATGAAAACCCTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGG > 7:22460/1‑88 CCTGCCCGAACGCCACAACTGCGACTGATGAAAACCCTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGG < 8:22460/88‑1 CGAACGCCACAACTGCGACTGATGAAAACCCTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGTTGCGTATTCTGGATGCGTTGC < 2:155435/149‑1 CGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGTTGCGTATTCTGGATGCGTTGCCTGGCGAACGTCGAGATGAAATGGCTGCACT < 7:265053/148‑1 GGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGTTGCGTATTCTGGATGCGTTGCCTGGCGAACGTCGAGATGAAATGGCTGCACTGTG > 4:146504/1‑149 GGCAACGCATCCAGAATACGCAACCGGTAAGGCACGCGACTGGCCTCAAGCAAATGCCAGGTTGAAACCCCGTCATGCGCGCCTTCCAGCGGATTGCCGGAAAGCTCGACCCTGCCCGAACGCCACAACTGCGACTGATGAAAACCCTCGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2736716‑2736562‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggcagGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGTTGCGTATTCTGGATGCGTTGCCTGGCGAACGTCGAGATGAAATGGCTGCACTGTG > NC_002947/2736606‑2736749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |