New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2736562 =	44 (0.790)	4 (0.080)	4/240	NT	8.4%	coding (3460/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein
	?	NC_002947	2736606 =	46 (0.890)					coding (3504/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein

GTTGCGCAGGGCATTTTCCGTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGTTGC  >  NC_002947/2736417‑2736697                                                                                                                                                  |                                                                                                                                        gTTGCGCAGGGCATTTTCCGTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGc                                                                                                                                      >  1:349030/1‑149 (MQ=255)  cacagtgcagccatttcatctcgacgttcgccaggcaacgcatccagaatacgcaaccggtaaggcacgcgactggcctcaagcaaatgccaggttgaaaccccgtcatgcgcgccttccagcggattgccggaaagctcgaccCTGcc                                                                                                                                     >  4:146504‑M1/145‑149 (MQ=255)    gcgcAGGGCATTTTCCGTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGccc                                                                                                                                    >  8:47892/1‑148 (MQ=255)     agtgcagccatttcatctcgacgttcgccaggcaacgcatccagaatacgcaaccggtaaggcacgcgactggcctcaagcaaatgccaggttgaaaccccgtcatgcgcgccttccagcggattgccggaaagctcgaccCTGCCCg                                                                                                                                   <  7:265053‑M1/7‑1 (MQ=255)      gcAGGGCATTTTCCGTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAg                                                                                                                                 <  1:267805/149‑1 (MQ=255)      gcAGGGCATTTTCCGTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAg                                                                                                                                 >  3:65094/1‑149 (MQ=255)       cAGGGCATTTTCCGTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAgg                                                                                                                                <  3:222487/149‑1 (MQ=255)                 tCCGTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTtcatc                                                                                                                       <  1:223934/148‑1 (MQ=255)                    gTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAgg                                                                                                                                >  8:183391/1‑136 (MQ=255)                    gTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAgg                                                                                                                                <  7:183391/136‑1 (MQ=255)                      ccAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCg                                                                                                                  >  4:292253/1‑148 (MQ=255)                        aGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAgg                                                                                                                                <  6:322169/132‑1 (MQ=255)                        aGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAgg                                                                                                                                >  5:322169/1‑132 (MQ=255)                          gCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGtt                                                                                                             >  3:200770/1‑149 (MQ=255)                              tGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTgg                                                                                                         <  7:47892/149‑1 (MQ=255)                                aCCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGc                                                                                                        <  4:200770/148‑1 (MQ=255)                                    gcaacgcatccagaatacgcaaccggtaaggcacgcgactggcctcaagcaaatgccaggttgaaaccccgtcatgcgcgccttccagcggattgccggaaagctcgaccCTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCg                                                                                                   <  2:155435‑M1/39‑1 (MQ=255)                                    aaCTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGGTTTAATCAGTCGAAGTTGTGGCGTTCg                                                                                                   >  8:203021/1‑149 (MQ=255)                                           atccagaatacgcaaccggtaaggcacgcgactggcctcaagcaaatgccaggttgaaaccccgtcatgcgcgccttccagcggattgccggaaagctcgaccCTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAggg                                                                                            >  1:155435‑M1/104‑149 (MQ=255)                                             cccGCTACCTGTCAACCACCCAGATGCCGGGGTTGCCCTACGGGCGGATGGACGCGCCAGAACTGCCCACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCTGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTc                                                                                          <  1:250354/149‑1 (MQ=255)                                               ctctACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTc                                                                                          >  7:105220/1‑147 (MQ=255)                                               ctctACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGa                                                                                        <  2:349030/149‑1 (MQ=255)                                                       gTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTtgt                                                                                                           >  3:136483/1‑122 (MQ=255)                                                       gTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTtgt                                                                                                           <  4:136483/122‑1 (MQ=255)                                                         cAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCgg                                                                               >  4:8492/1‑148 (MQ=255)                                                          aaaCACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGc                                                                              >  2:188213/1‑148 (MQ=255)                                                                  aGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGCACCTCAGCGACAACCGGATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTg                                                                     >  3:254836/1‑149 (MQ=255)                                                                        ccGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGgc                                                               >  1:45623/1‑149 (MQ=255)                                                                        cagggTTTCCCTACGGGCTGATGGACCCGCCAGAACTGCAAACACTGAACCTCAGCGACAACCGTATTTATGAACTGCCCGAGGGTTTTCATCAGTAGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTATCCGGCAATCCGCTGGAAGgc                                                               >  6:24444/3‑149 (MQ=255)                                                                                cccTACGGGCTGATGGACGCGCCAGAACTGCACTCCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGATGGTTTTCATCAGTGGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATg                                                        <  6:128531/148‑1 (MQ=255)                                                                                cccTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATg                                                        <  3:292253/148‑1 (MQ=255)                                                                                  cTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACg                                                     <  1:12398/149‑1 (MQ=255)                                                                                   tACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGTCTCGCAAGACgg                                                    >  8:77846/1‑149 (MQ=255)                                                                                     cGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACgggg                                                  <  2:45623/149‑1 (MQ=255)                                                                                        gCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGttt                                               >  7:163153/1‑149 (MQ=255)                                                                                               gACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTg                                        <  4:65094/149‑1 (MQ=255)                                                                                                aCGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTgg                                       >  1:165340/1‑149 (MQ=255)                                                                                                    gcCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCAtt                                   >  6:75637/1‑149 (MQ=255)                                                                                                       cccgtcatgcgcgccttccagcggattgccggaaagctcgaccCTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAgg                                                                                             >  7:22460‑M1/44‑88 (MQ=255)                                                                                                       cccgtcatgcgcgccttccagcggattgccggaaagctcgaccCTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAgg                                                                                             <  8:22460‑M1/45‑1 (MQ=255)                                                                                                        gAACTGCACACCCTGAACCTCTGCGACAACCGTATTTCTTAACTGCCCGAGGTTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGTCGTGGTTTCAACCTGGCATTTGCt                               <  3:163957/149‑1 (MQ=255)                                                                                                          aCTGGACACCCTGATCCTCATCGACATCCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTTTGGCGTTCGTGCATGGTCGAGCTTTCCGGCAATCCGCTGGATGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCtt                              <  5:24444/148‑1 (MQ=255)                                                                                                              cacaCCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAgg                          <  8:105220/148‑1 (MQ=255)                                                                                                                cacCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGGTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCa                       <  2:294019/149‑1 (MQ=255)                                                                                                                 acCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAg                      <  7:203021/149‑1 (MQ=255)                                                                                                                       aaCCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTcgc                  <  4:254836/147‑1 (MQ=255)                                                                                                                           tCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCt            >  6:144309/1‑149 (MQ=255)                                                                                                                              gCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTAc         <  3:8492/149‑1 (MQ=255)                                                                                                                                   aaCCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGtt    >  4:286934/1‑149 (MQ=255)                                                                                                                                   aaCCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGtt    <  2:165340/149‑1 (MQ=255)                                                                                                                                     ccGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGTTGc  <  5:75637/149‑1 (MQ=255)                                                                                                                                              tGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGt                >  4:110160/1‑126 (MQ=255)                                                                                                                                              tGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGt                <  3:110160/126‑1 (MQ=255)                                                                                                                                               gAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGc              >  6:130925/1‑127 (MQ=255)                                                                                                                                               gAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGc              <  5:130925/127‑1 (MQ=255)                                                                                                                                                aaCTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAg                           >  1:313831/1‑113 (MQ=255)                                                                                                                                                aaCTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAg                           <  2:313831/113‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                        GTTGCGCAGGGCATTTTCCGTCCAGGCAATGACCGAACTGAATGCCCTCTACCTGTCAAACACCCAGATGCCCGGGTTTCCCTACGGGCTGATGGACGCGCCAGAACTGCACACCCTGAACCTCAGCGACAACCGTATTTCTGAACTGCCCGAGGGTTTTCATCAGTCGCAGTTGTGGCGTTCGGGCAGGGTCGAGCTTTCCGGCAATCCGCTGGAAGGCGCGCATGACGGGGTTTCAACCTGGCATTTGCTTGAGGCCAGTCGCGTGCCTTACCGGTTGC  >  NC_002947/2736417‑2736697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.