New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3366553 =	42 (0.760)	11 (0.200)	10/252	NT	19.2%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	5392467 =	51 (0.940)					coding (206/582 nt)	PP_5710	hypothetical protein

AGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3366688‑3366553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCTGCCGAATACCCAAGGCCACATGCCTTAATCGCCTGATCAACTGGTGCAACAGATCGATAGGGA  >  NC_002947/5392467‑5392613                                                                                                                                                                                                                                                                                              AGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCAC                                                                                                                                        >  5:247963/1‑149                  AGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACCCCTT                                                                                                                         <  1:80141/148‑1                           GGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTC                                                                                                              <  3:250636/149‑1                                 CCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCC                                                                                                        <  6:247963/149‑1                                                                TCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGG                                                                         >  1:93001/1‑149                                                                TCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGG                                                                         >  5:179892/1‑149                                                                                  ATCATATATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCTGCCGAATACC                                                       <  6:179892/149‑1                                                                                         ATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACCCCTTTAGCCTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCTGCCGAATAC                                                        >  4:29778/1‑141                                                                                         ATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCTGCCGAATAC                                                        <  3:29778/141‑1                                                                                                    GAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCTGC                                                               <  8:111677/123‑1                                                                                                    GAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCCTTCATCGATGCACTGAAATCTACACCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCTGC                                                               >  7:111677/1‑123                                                                                                                                     ACCCCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCTGCCGAATACCCAAGGCCACATGCCTTAATCGCCTGATCAACTGGTGCAACAGATCGATA      <  2:93001/148‑1                                                                                                                                        CCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCT                                                                 >  1:50098/1‑86                                                                                                                                        CCTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCT                                                                 <  2:50098/86‑1                                                                                                                                         CTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGGCTTTGAATGCGGCGGTTACATCTGCCGAATACCCAAGGCCACATGCCTTAATCGCCTGATCAACTGGTGCTACAGATCGATAGGGA  <  4:228387/148‑1                                                                                                                                                                                                                                                                                              AGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTG‑CCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3366688‑3366553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTTCATCGATGCACTGAAATCTACCCCTTTAGACTTGGTCGCATCCGCATACTGAAAAGCGCCTTTGAATGCGGCGGTTACATCTGCCGAATACCCAAGGCCACATGCCTTAATCGCCTGATCAACTGGTGCAACAGATCGATAGGGA  >  NC_002947/5392467‑5392613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.