| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3366553 = | 42 (0.760) | 39 (0.720) | 28/252 | NT | 60.3% | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase |
| ? | NC_002947 | 5399834 = | 10 (0.180) | coding (647/1437 nt) | PP_4743 | hypothetical protein | |||||
ACACATCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3366700‑3366553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAATAAAGCAGACATCATAAAATCACTCTCCGCCGGTCTTATTTC > NC_002947/5399834‑5399981 ACACATCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCt > 2:80141/1‑148ACACATCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC < 8:102306/148‑1ACACAGCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGCCGGTGGATGCCCAGCAAGCCACGGCCTCTCGAATAACATTTTAAATCATATATTTACAGAACGAAGGTCCTACTTTATGCGTTATCTCGGCATAAGCCCc > 2:265873/1‑148 ACATCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGACAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACA < 3:308447/149‑1 ATCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCttcat < 1:143589/149‑6 ATCCACCAAGCGAGGCAAAAGCATCAGCATAGACGGATAGCCAGACGGAGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGACCAAATATTTGCCTTATCTCGGAATAACCCattcat > 7:35569/1‑143 TCCGCCAAGCGATGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGATTGTCCTAATTTTTGCCTTATCTCGGCATAACCCCttcatc < 8:35569/149‑7 CCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC > 1:143596/1‑140 CGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTA < 4:169768/149‑1 ATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTT > 8:289458/1‑149 GACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATC < 8:127119/148‑1 AGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAAC > 3:81212/1‑149 AGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCATAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAAC > 5:257958/1‑149 TGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAAC < 8:120809/149‑1 TGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAAC > 4:266061/1‑149 GATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCATAATTTTTGCCTTATCTCGGCATAAACCCAAATACTAATGAGTAGCCATAGTGCTTCGACCATAACGACTGCAAACGAAAACCT > 7:23593/1‑149 CCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATATCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGACATAGTGCTTCGACCATCACGCCTGAAAACGAAAAACTCATC > 8:298873/1‑148 AGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAAC > 5:31484/1‑149 CCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTCTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACTTCATCAACTTATTC < 7:95123/149‑1 acttCCTCTCGAATAACCTTTTAAATCATATATTTACATAACGAATTTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGA < 8:23593/145‑1 CTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAG < 8:200100/85‑1 CTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAG > 7:200100/1‑85 CCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGAC > 2:101195/1‑146 CTTTTAAATCATATATTTACTGAACGAATATCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGATTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGA < 7:298873/149‑1 TTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTAGAGCTCCAAGACGACAAtc > 1:14537/1‑146 TTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACAACTGCAAACGAAAA < 5:125600/113‑1 TTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACAACTGCAAACGAAAA > 6:125600/1‑113 TTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAtc < 2:14537/146‑3 TTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATT < 7:289458/148‑1 AAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTA > 1:12496/1‑149 AAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTA > 1:152467/1‑149 AAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTG > 1:6592/1‑147 AATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTA < 3:266061/148‑1 TCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGT > 3:160494/1‑148 ATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCA < 2:6592/148‑1 ATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCA < 2:12496/148‑1 CAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAA < 4:81212/149‑1 TCCTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAATAAAGCAGACA > 1:346967/1‑149 CTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAATAAAGCAGACATC < 4:160494/149‑1 CTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAATAAAGCAGACATC < 6:257958/149‑1 CTAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAATAAAGCAGACATC < 1:101195/149‑1 TAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAATAAAGCAGACATC > 5:139893/1‑148 TAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTC > 7:34483/1‑97 TAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTC < 8:34483/97‑1 TAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAA > 7:254693/1‑75 TAATTTTTGCCTTATCTCGGCATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAA < 8:254693/75‑1 CATAACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAATAAAGCAGACATCATAAAATCACTCTCCGCCGGT < 6:31484/149‑1 AACCCCACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAATAAAGCAGACATCATAAAATCACTCTCCGCCGGTCT > 1:133052/1‑148 CACATACTAATGATTAGCCATAGTGCTTCGACCATCACGACTGCAAAAGAAAACCTCATCAACTTATTCTAGCTCCAAGACTACAAGAGTGTAGTCAATAAAGTCAATAAAGCAGACATCATAAAATCACTCTCCGCCGGTCTTATTTC < 1:265873/149‑1 ACACATCCCCCAAGCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3366700‑3366553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACATACTAATGAGTAGCCATAGTGCTTCGACCATCACGACTGCAAACGAAAACCTCATCAACTTATTCGAGCTCCAAGACGACAAGATTGTAGTCAATAAAGTCAATAAAGCAGACATCATAAAATCACTCTCCGCCGGTCTTATTTC > NC_002947/5399834‑5399981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |