New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3383565	58 (1.050)	45 (0.810)	41/256	NT	57.0%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 5399838	10 (0.180)					coding (651/1437 nt)	PP_4743	hypothetical protein

AGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3383425‑3383565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGGTCTTTGAATAACTCGACGATG  <  NC_002947/5399838‑5399700                                                                                                                                                                                                                                                                                          AGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGT                                                                                                                                     >  2:245490/1‑149  GATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTACCTTATCTCGGCATGACCCCTATGTGGTT                                                                                                                                    <  3:143979/149‑1      AAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCT                                                                                                                                 <  7:20536/148‑1                 AATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTT                                                                                                                               <  8:101117/139‑1                 AATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTT                                                                                                                               >  7:101117/1‑139                     GATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTGAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCA                                                                                                                 >  4:201084/1‑149                       TGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGT                                                                                                               <  3:74024/149‑1                          CTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGAT                                                                                                            >  2:167270/1‑149                                      GGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTG                                                                                                >  4:152900/1‑149                                      GGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTT                                                                                                 <  5:129680/148‑1                                         GCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCGGTGATCTCTAGTACTTGCT                                                                                              >  1:55085/1‑148                                           GAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCG                                                                                           >  1:336349/1‑149                                           GAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATAACGGCATTACCACAATGAGGTTGATTTTAGAAGCTGCATAAGTGATCTCAAGTACTTGCTTCG                                                                                           >  7:296949/1‑149                                             AGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGG                                                                                         <  3:325277/149‑1                                                 GTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAAT                                                                                      >  4:139776/1‑148                                                   CTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTC                                                                                    >  1:169818/1‑148                                                        CTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGG                                                                                          <  2:193926/137‑1                                                        CTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGG                                                                                          >  1:193926/1‑137                                                             CAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGGTTCGGGATTTCAATCTGCCATT                                                                         >  8:249553/1‑149                                                                      TAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTA                                                                <  1:245490/149‑1                                                                        ATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTTCATCGGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGG                                                              <  2:55085/149‑1                                                                        ATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGT                                                                 <  3:152900/146‑1                                                                           TACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAAT                                                           <  3:51639/149‑1                                                                           TACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAAT                                                           <  1:167270/149‑1                                                                           TACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAAT                                                           <  2:336349/149‑1                                                                           TACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACACCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAAT                                                           >  3:269308/1‑149                                                                            ACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAA                                                                                       <  5:364633/120‑1                                                                            ACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAA                                                                                       >  6:364633/1‑120                                                                                GTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATC                                                      >  8:24620/1‑149                                                                                      ATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTC                                                >  1:314407/1‑149                                                                                          AATAGCTTAGAGAACGAATGTCCTAATTTTTGCATTATCTCGTCATGAACCCTATGTGGTTGCTTTTAGCCGCTGAATCAGTTATCTCTAGTACTTGCTTCTGTAATTCAAACTGCAATTCGTGATGTATGAATGAATCATGCTCGTC                                             >  2:331976/1‑148                                                                                                    AGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTA                                  <  7:24620/149‑1                                                                                                              TCCTAATTTTTGACTTATCTAGTATTGACATCTATGTGGTTGATTTTAGCCGCTGCATAAGTTATCTCTATTACTTTCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTC                         <  1:331976/148‑1                                                                                                               CCTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGG                       >  2:273590/1‑149                                                                                                                CTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGGT                      >  1:152881/1‑149                                                                                                                CTAATTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGG                       <  4:269308/148‑1                                                                                                                    TTTTTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGGTCTTT                  <  7:249553/149‑1                                                                                                                       TTGCCTTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGCATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGGTCTTTGA                <  1:273590/148‑1                                                                                                                        TGCCTTATGTCGTCATGACCCGTATGTGGTTGCTTTTAGCCGCTGCTTCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATTAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGGTCTTTGAA               <  3:201084/148‑1                                                                                                                            TTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAAT                                                           <  2:39222/100‑1                                                                                                                            TTATCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAAT                                                           >  1:39222/1‑100                                                                                                                               TCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTA                                                                                                       >  7:197609/1‑53                                                                                                                               TCTCGGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTA                                                                                                       <  8:197609/53‑1                                                                                                                                   GGCATGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGGTCTTTGAATAACTCGACGAT   <  3:139776/149‑1                                                                                                                                    GCAGGACCCCTATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGGTCTTTGAATAACTCGACGATG  <  8:296949/149‑1                                                                                                                                                                                                                                                                                          AGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3383425‑3383565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGTGGTTGCTTTTAGCCGCTGCATCAGTGATCTCTAGTACTTGCTTCGGGAATTCAAACTGCCATTCGGGATGTAGGAATGAATCCGGCTCGTCTAGCAAAGTTAGACAATTTCGGTCTTTGAATAACTCGACGATG  <  NC_002947/5399838‑5399700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.