New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3450042	51 (0.920)	4 (0.070)	4/250	NT	6.5%	coding (1240/1278 nt)	PP_3067	hypothetical protein
	?	NC_002947	= 3450071	65 (1.200)					coding (1269/1278 nt)	PP_3067	hypothetical protein

GAATTACATTGCTATCAATAGGGCGCGAGGAAGACACGCTAATGATGAGCTGGAGGTGCTAAAGATACGGCGTAAGGAACTGCTGCAATTATTTTCTGAATTTGAGAAAAAGGCGGCTAGTTACGAGTTGGAGCTGACACAGCTCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3449894‑3450042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagAGGATCGAGGGGCAAGGCCTTCTGATCCCCTGTGAGC  <  NC_002947/3450071‑3450035                                                                                                                                                                                            GAATTACATTGCTATCAATAGGGCGCGAGGAAGACACGCTACTGATGAGCTGGAGGTGCTAAAGATACGGCGTAAGGAACTGCTGCAATTATTTTCTGAATTTGAGAAAAAGGCGGCTAGTTACGAGTTGGAGCTGACACAGCTCACAG                                       <  8:276816/149‑1               TCAATAGGGCGCGAGGAAGACACGCTAATGATGAGCTGGAGGTGCTAAAGATACGGCGTAAGGAACTGCTGCAATTATTTTCTGAATTTGAGAAAAAGGCGGCTAGTTACGAGTTGGAGCTGACACAGCTCACAGAGGATCGAGGGGC                          >  2:247435/1‑148                                      GCTAATGATGAGCTGGAGGTGCTAAAGATACGGCGTAAGGAACTGCTGCAATTATTTTCTGAATTTGAGAAAAAGGCGGCTAGTTACGAGTTGGAGCTGACACAGCTCACAGAGGATCGAGGGGCAAGGCCTTCTGATCCCCTGTGAGC  <  1:247435/149‑1                                            GATGAGCTGGAGGTGCTAAAGATACGGCGTAAGGAACTGCTGCAATTATTTTCTGAATTTGAGAAAAAGGCGGCTAGTTACGAGTTGGAGCTGACACAGCTCACAGAGGATCGAGGGGCAAGGCCTTCTGATCCCCTGTGAG   >  5:173791/1‑142                                            GATGAGCTGGAGGTGCTAAAGATACGGCGTAAGGAACTGCTGCAATTATTTTCTGAATTTGAGAAAAAGGCGGCTAGTTACGAGTTGGAGCTGACACAGCTCACAGAGGATCGAGGGGCAAGGCCTTCTGATCCCCTGTGAG   <  6:173791/142‑1                                                                                                                                                                                            GAATTACATTGCTATCAATAGGGCGCGAGGAAGACACGCTAATGATGAGCTGGAGGTGCTAAAGATACGGCGTAAGGAACTGCTGCAATTATTTTCTGAATTTGAGAAAAAGGCGGCTAGTTACGAGTTGGAGCTGACACAGCTCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3449894‑3450042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagAGGATCGAGGGGCAAGGCCTTCTGATCCCCTGTGAGC  <  NC_002947/3450071‑3450035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.