New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3479997 =	56 (1.010)	3 (0.060)	3/242	NT	5.5%	coding (1222/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	3480070 =	50 (0.960)					coding (1149/2496 nt)	PP_3090	OmpA domain‑containing protein

GCCAACCCTTACCAGAATGCCGAAATGCTGCGCGGTTTCTATTTCACCGCGGCGCTGCAGGCCGACGAGGCTCAGTGGGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3480147‑3479997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagccCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGCAGCATTTCGGCATTCTGGTAAGGGTTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCG  >  NC_002947/3480070‑3480206                                                                                                                                                                                                                                                                                                  GCCAACCCTTACCAGAATGCCGAAATGCTGCGCGGTTTCTATTTCACCGCGGCGCTGCAGGCCGACGAGGCTCAGTGGGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGCAG                                                                                                                                             >  7:171105/1‑149  cctACCCTTACCAGAATGCCGAAATGCTGCGCGGTTTCTATTTCACCGCGGCGCTGCAGGCCGACGAGGCTCAGTGGGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGC                                                                                                                                               <  7:169304/143‑1  ccgACCCTTACCAGAATGCCGAAATGCTGCGCGGTTTCTATTTCACCGCGGCGCTGCAGGCCGACGAGGCTCAGTGGGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGC                                                                                                                                               >  8:169304/4‑146  CCAACCCTTACCAGAATGCCGAAATGCTGCGCGGTTTCTATTTCACCGCGGCGCTACAGGCCGACGAGGCTCAGTGGGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCACGAACACGCAAAAGGTACGGGCACTGCCGGCAGC                                                                                                                                            >  1:99085/1‑149   CAACCCTTACCAGAATGCCGAAATGCTGCGCGGTTTCTATTTCACCGCGGCGCTGCAGGCCGACGAGGCTCAGTGGGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGCAGC                                                                                                                                            >  6:206037/1‑148                                         ATTTCACCGCGGCGCTGCAGGCCGACGAGGCTCAGTGGGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGCA                                                                                                                                              <  3:294697/108‑1                                         ATTTCACCGCGGCGCTGCAGGCCGACGAGGCTCAGTGGGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGCA                                                                                                                                              >  4:294697/1‑108                                                                              GGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGCAGCATTTCGGCATTCTGGTAAGGGTT                                                                >  1:355921/1‑149                                                                               GGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGCAGCATTTCGGCATTCTGGTAAGGGTTG                                                               >  2:2984/1‑149                                                                                             GCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGCAGCATTTCGGCATTCTGGTAAGGGTTGGCACGCAGCAGGCT                                                 <  1:2984/149‑1                                                                                                                                            CTGCCGGCAGCCCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGCAGCATTTCGGCATTCTGGTAAGGGTTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCG  <  2:355921/149‑1                                                                                                                                                                                                                                                                                                  GCCAACCCTTACCAGAATGCCGAAATGCTGCGCGGTTTCTATTTCACCGCGGCGCTGCAGGCCGACGAGGCTCAGTGGGGCTGCCACGGCCAGCATGTGGCCGAACGCTTCGCGCTCGAACACGCAGAAGGTACGGGCACTGCCGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3480147‑3479997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagccCCACTGAGCCTCGTCGGCCTGCAGCGCCGCGGTGAAATAGAAACCGCGCAGCATTTCGGCATTCTGGTAAGGGTTGGCACGCAGCAGGCTGTCGACGAACTGATGCAGGCGCGGCTTGAGCGCGGCCAGCTCCAGCG  >  NC_002947/3480070‑3480206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.