New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3647188 =	55 (0.990)	3 (0.060)	3/238	NT	5.8%	intergenic (‑125/‑529)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
	?	NC_002947	3647269 =	46 (0.890)					intergenic (‑206/‑448)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein

ATGAAATTGGCATGCTTCTGGCTTCTTGTATCAGCGAGTAGAAGCGGTCAGTGCCAGGCATGGCATGGGGCATTGCTCTTGCGTCCTTCGGGGCGTACATCCGAGCGGATGTTTGAACGAGGCTATGGCAGCCCCGGGCAAGAGAGCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3647338‑3647188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcaatgCCCCATGCCATGCCTGGCACTGACCGCTTCTACTCGCTGATACAAGAAGCCAGAAGCATGCCAATTTCATGAAGCCGCTGACTTTGCGGTGTAGCGACCCGCACCCGAGGGGGACGGCACTGACGCGTGAGTTGAGAAGGTG  >  NC_002947/3647269‑3647410                                                                                                                                                                                                                                                                                                       ATGAAATTGGCATGCTTCTGGCTTCTTGTATCAGCGAGTAGAAGCGGTCAGTGCCAGGCATGGCATGGGGCATTGCTCTTGCGTCCTTCGGGGCGTACATCCGAGCGGATGTTTGAACGAGGCTATGGCAGCCCCGGGCAAGAGAGCAA                                                                                                                                                  >  8:222088/1‑149                       TTCTTGTATCAGCGAGTAGAAGCGGTCAGTGCCAGGCATGGCATGGGGCATTGCTCTTGCGTCCTTCGGGGCGTACATCCGAGCGGATGTTTGAACGAGGCTATGGCAGCCCCGGGCAAGA                                                                                                                                                        <  7:158554/121‑1                       TTCTTGTATCAGCGAGTAGAAGCGGTCAGTGCCAGGCATGGCATGGGGCATTGCTCTTGCGTCCTTCGGGGCGTACATCCGAGCGGATGTTTGAACGAGGCTATGGCAGCCCCGGGCAAGA                                                                                                                                                        >  8:158554/1‑121                                                                      GCATTGCTCTTGCGTCCTTCGGGGCGTACATCCGAGCGGATGTTTGAACGAGGCTATGGCAGCCCCGGGCAAGAGAGCAATGCCCCATGCCATCCCAGGCACTGACCGCTTCTACTCGCTGATACAAGAACCCAGAAGCATGCCAAat                                                                              >  2:323892/1‑146                                                                       CATTGCTCTTGCGTCCTTCGGGGCGTACATCCGAGCGGATGTTTGAACGAGGCTATGGCAGCCCCGGGCAAGAGAGCAATGCCCCATGCCATGCCTGGCACTGACCGCTTCTACTCGCTGATACAAGAAGCCAGAAGCATGCCAATTT                                                                             >  3:40973/1‑148                                                                         TTGCTCTTGCGTCCTTCGGCGCGTACATCCGAGCGGATGTTTGAACGAGGCTATGGCAGCCCCGGGCAAGAGAGCAATGCCCCATGCCCTGCCAGGCACTGACCGCTTCTACTCCCTGATACAAGAAGGCAGAAGCATGCCATTTTCAT                                                                          >  4:272381/1‑149                                                                                                                                                GAGCAATGCCCCATGCCATGCCTGGCACTGACCGCTTCTACTCGCTGATACAAGAAGCCAGAAGCATGCCAATTTCATGAAGCCGCTGACTTTGCGGTGTAGCGACCCGCACCCGAGGGGGACGGCACTGACGCGTGAGTTGAGAAGGT   <  6:210229/149‑1                                                                                                                                                 AGCAATGCCCCATGCCATGCCTGGCACTGACCGCTTCTACTCGCTGATACAAGAAGCCAGAAGCATGCCAATTTCATGAAGCCGCTGACTTTGCGGTGTAGCGACCCGCACCCGAGGGGGACGGCACTGACGCGTGAGTTGAGAAGGTG  <  4:291838/149‑1                                                                                                                                                                                                                                                                                                       ATGAAATTGGCATGCTTCTGGCTTCTTGTATCAGCGAGTAGAAGCGGTCAGTGCCAGGCATGGCATGGGGCATTGCTCTTGCGTCCTTCGGGGCGTACATCCGAGCGGATGTTTGAACGAGGCTATGGCAGCCCCGGGCAAGAGAGCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3647338‑3647188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcaatgCCCCATGCCATGCCTGGCACTGACCGCTTCTACTCGCTGATACAAGAAGCCAGAAGCATGCCAATTTCATGAAGCCGCTGACTTTGCGGTGTAGCGACCCGCACCCGAGGGGGACGGCACTGACGCGTGAGTTGAGAAGGTG  >  NC_002947/3647269‑3647410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.