New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3903921	52 (0.940)	4 (0.080)	4/246	NT	7.9%	coding (822/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	= 3903973	43 (0.810)					coding (770/1593 nt)	ilvA‑I	threonine deaminase

GTCTGCCCCTGCACACCTTCACGCGCCACGTACTTCTTGATACCGGCCACGGCCAAGGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACC‑TCGTCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3903769‑3903921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgGCGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGGG  <  NC_002947/3903973‑3903827                                                                                                                                                                                                                                                                                                               GTCTGCCCCTGCACACCTTCACGCGCCACGTACTTCTTGATACCGGCCACGGCCAAGGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACC‑TCGTC                                                                                                                                                         >  6:222326/1‑149                                                             CCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACC‑TCGTCGACGGCGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTC                                                                                             <  4:164301/149‑1                                                                    GCTCGGTGATCGAACGGGGGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTTTGCCGACGGCGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAG                                                                                       <  3:232097/149‑1                                                                              CGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACC‑TCGTCGACGGCGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGGGGTGGTGACGGT                                                                            >  4:251753/1‑149                                                                                AACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACC‑TCGTCGACGGCGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGA                                                                          <  3:251753/149‑1                                                                                                                                                        ACGGCGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGG   <  1:300456/149‑1                                                                                                                                                        ACGGCGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGG   <  7:124935/149‑1                                                                                                                                                         CGGCGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGGG  <  6:2376/149‑1                                                                                                                                                                                                                                                                                                               GTCTGCCCCTGCACACCTTCACGCGCCACGTACTTCTTGATACCGGCCACGGCCAAGGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACC‑TCGTCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3903769‑3903921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgGCGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGGG  <  NC_002947/3903973‑3903827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.