New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3903921 | 52 (0.940) | 4 (0.080) | 4/246 | NT | 7.9% | coding (822/1593 nt) | ilvA‑I | threonine deaminase |
? | NC_002947 | = 3903973 | 43 (0.810) | coding (770/1593 nt) | ilvA‑I | threonine deaminase |
CCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGATC > NC_002947/3903827‑3904119 | ccccGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCcg < 6:2376‑M2/149‑3 (MQ=255) cccGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCcgt < 1:300456‑M2/149‑4 (MQ=255) cccGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCcgt < 7:124935‑M2/149‑4 (MQ=255) gCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAg < 4:63068/149‑1 (MQ=255) tCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGt > 8:58835/1‑149 (MQ=255) gTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCAGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGcc < 8:324828/149‑1 (MQ=255) tGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGccc < 1:325796/149‑1 (MQ=255) aaCGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGc < 5:222326/149‑1 (MQ=255) aCGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCg < 2:300456/149‑1 (MQ=255) tgtCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGc > 2:114258/1‑146 (MQ=255) gtcgtAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATc < 1:209787/148‑1 (MQ=255) aGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCgg < 2:4132/136‑1 (MQ=255) aGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCgg > 1:4132/1‑136 (MQ=255) gATATCCTTGATCGCCGCGCACAGGTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACgcgc < 3:285310/148‑1 (MQ=255) ttGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGTAGGATCACGCGCTCGCCGAc > 4:78217/1‑149 (MQ=255) gccgcGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCAt > 4:29242/1‑149 (MQ=255) ccgcGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATg > 1:324140/1‑149 (MQ=255) acaGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGcc < 5:2376/149‑1 (MQ=255) aGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGTAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTg < 3:78217/149‑1 (MQ=255) aGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTg > 5:215818/1‑149 (MQ=255) gCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTg > 8:337508/1‑148 (MQ=255) tCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTgcag > 7:278838/1‑149 (MQ=255) cTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAAGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTgg < 1:114258/148‑1 (MQ=255) tCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCcgtcgacgaggtggtgacggtgagcagtgacgagctgtgcgcggcgatcaaggatatctacgacgacacccgtt < 3:251753‑M2/149‑75 (MQ=255) tCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAACGTGCCCACCTGCGGCTGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGa > 3:242700/1‑148 (MQ=255) aCCGTCACCACCCCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCcgtcgacgaggtggtgacggtgagcagtgacgagctgtgcgcggcgatcaaggatatctacgacgacacccgttcg > 4:251753‑M2/1‑73 (MQ=255) ccGTCACAACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCt < 8:124935/149‑1 (MQ=255) tCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGcc < 3:320524/149‑1 (MQ=255) accTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCa < 6:68767/97‑1 (MQ=255) accTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCa > 5:68767/1‑97 (MQ=255) accTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCgccgc > 4:182765/1‑145 (MQ=255) cTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCcgtcggcaaaggtggtgacggtgagcagtgacgagctgtgcgcggcgatcaaggatatctacgacgacccccgttcgatcaccgagc < 3:232097‑M2/149‑88 (MQ=255) cTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGa > 5:306404/1‑149 (MQ=255) cgtcgACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATg > 7:11931/1‑113 (MQ=255) cgtcgACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATg < 8:11931/113‑1 (MQ=255) gacgaAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCcgtcgacgaggtggtgacggtgagcagtgacgagctgtgcgcggcgatcaaggatatctacgacgacacccgttcgatcaccgagccgtccgg < 4:164301‑M2/149‑94 (MQ=255) gacgaAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACAcc > 2:229411/1‑147 (MQ=255) ggcACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACg > 5:350347/1‑149 (MQ=255) aGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAgg < 2:324140/149‑1 (MQ=255) aaGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGCCGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCGCCTGCACGTCAgggggaag > 8:268146/1‑144 (MQ=255) aaGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAg > 6:89998/1‑149 (MQ=255) cAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTa < 3:29242/149‑1 (MQ=255) aaTGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAgg < 2:289076/146‑1 (MQ=255) aaTGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAgg > 1:289076/1‑146 (MQ=255) aaTGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTAc > 6:11536/1‑149 (MQ=255) aaTGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTAc < 5:89998/149‑1 (MQ=255) gcCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACAt < 6:306404/149‑1 (MQ=255) gcCGATCTGCGCCACCGCCACGCCGTCGGCAAAGCTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCAATCACCTTc < 6:357193/124‑1 (MQ=255) gcCGATCTGCGCCACCGCCACGCCGTCGGCAAAGATGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCAATCACCTTc > 5:357193/1‑124 (MQ=255) cgccaccgccacGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAggcgg < 7:337508/146‑1 (MQ=255) cacGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGa < 8:278838/149‑1 (MQ=255) cGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGATc < 7:58835/149‑1 (MQ=255) | CCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGCACAGCTCGAAGCAATGGGCGCCGATCTGCGCCACCGCCACGCCGTCGGCAAAGGTGCCCACCTGCGGCAGGATCACGCGCTCGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGATC > NC_002947/3903827‑3904119 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |