New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4024595	36 (0.650)	4 (0.080)	4/244	NT	10.1%	coding (1104/1194 nt)	emrA	multidrug transporter membrane fusion protein
	?	NC_002947	= 4024600	37 (0.700)					coding (1099/1194 nt)	emrA	multidrug transporter membrane fusion protein

ACAGGCCGATGGTGGTCAGCAGCAGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4024445‑4024595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaccACCCAGGTGTATGACCACCAGCTGATGGAAGCCGACAACCTGATCGCCCGGCTGATTCACGAGAACAGCGCAACCGGCAAGACGGCGCAACGATGAGCAACAACGCCGCTGCCCAGTTCACGCCGCCGAGTCTGCTGCTGACCACCAT  <  NC_002947/4024600‑4024453                                                                                                                                                                                                                                                                                                             ACAGGCCGATGGTGGTCAGCAGCAGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACA                                                                                                                                                        >  6:317298/1‑149                        AGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCAT                                                                                                                                                           >  3:265000/1‑123                        AGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCAT                                                                                                                                                           <  4:265000/123‑1                                                     GTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACAC                                                                                                                                                       <  7:122489/98‑1                                                     GTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACAC                                                                                                                                                       >  8:122489/1‑98                                                                                                                             GCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTATGACCACCAGCTGATGGAAGCCGACAACCTGATCGCCCGGCTGATTCACGAGAACAGCGCAACCGGCAAGACGGCGCAACGATGAGCAACAAC                                              <  7:336879/131‑1                                                                                                                             GCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTATGACCACCAGCTGATGGAAGCCGACAACCTGATCGCCCGGCTGATTCACGAGAACAGCGCAACCGGCAAGACGGCGCAACGATGAGCAACAAC                                              >  8:336879/1‑131                                                                                                                             GCTTCCATCAGCTGGTGGTCATACACCACCCAGGTGTATGACC                                                                                                                                      <  3:110176/43‑1                                                                                                                             GCTTCCATCAGCTGGTGGTCATACACCACCCAGGTGTATGACC                                                                                                                                      >  4:110176/1‑43                                                                                                                                                       CACCCAGGTGTATGACCACCAGCTGATGGAAGCCGACAACCTGATCGCCCGGCTGATTCACGAGAACAGCGCAACCGGCAAGACGGCGCAACGATGAGCAACAACGCCGCTGCCCAGTTCACGCCGCCGAGTCTGCTGCTGACCACCAT  >  7:185565/1‑149                                                                                                                                                                                                                                                                                                             ACAGGCCGATGGTGGTCAGCAGCAGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4024445‑4024595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaccACCCAGGTGTATGACCACCAGCTGATGGAAGCCGACAACCTGATCGCCCGGCTGATTCACGAGAACAGCGCAACCGGCAAGACGGCGCAACGATGAGCAACAACGCCGCTGCCCAGTTCACGCCGCCGAGTCTGCTGCTGACCACCAT  <  NC_002947/4024600‑4024453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.