New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4024595	36 (0.650)	4 (0.080)	4/244	NT	10.1%	coding (1104/1194 nt)	emrA	multidrug transporter membrane fusion protein
	?	NC_002947	= 4024600	37 (0.700)					coding (1099/1194 nt)	emrA	multidrug transporter membrane fusion protein

ATGGTGGTCAGCAGCAGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATGCGCACGGGTACTCGC  >  NC_002947/4024453‑4024748                                                                                                                                                    |                                                                                                                                                     aTGGTGGTCAGCAGCAGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTg                                                                                                                                                     >  7:185565‑M2/1‑148 (MQ=255)          agcagcagACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCCTCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTg                                                                                                                                            <  2:278766/149‑1 (MQ=255)           gcagcagACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATAGGTGCGCCGTCTTGCCGATTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTgg                                                                                                                                           <  8:130268/149‑1 (MQ=255)           gcagcagACTCGGCGGCGTGAACTGGGCAGCGGCGTTGCTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTgg                                                                                                                                           <  3:211997/149‑1 (MQ=255)               cagACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCtt                                                                                                                                       <  7:223876/149‑1 (MQ=255)               cagACGCGGCGGCGGGAACGGGGCAGCGGCGTGGTGGCGCATCGTGGCGCCGGCGTGCCGGTTGCGCTGTTCGCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCGGGTGGTCATACACCTGGGTGGTGTAGCTGGCCtt                                                                                                                                       <  7:219341/149‑1 (MQ=255)                      ggcggcGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGt                                                                                                                                <  1:164858/149‑1 (MQ=255)                      ggcggcGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGt                                                                                                                                <  1:8138/149‑1 (MQ=255)                               aaCTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTgg                                                                                                                       >  3:329753/1‑149 (MQ=255)                                    ggCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAg                                                                                                                  <  6:43215/149‑1 (MQ=255)                                          ggcgTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCgg                                                                                                            <  3:258784/149‑1 (MQ=255)                                          ggcgTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAACTGGCCTTCTGCGGTGGctgctg                                                                                                                        <  1:141128/137‑1 (MQ=255)                                             gttgttGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCACCCAggtgtatgaccaccagctgatggaagc                                                                                                                           >  8:336879‑M2/1‑104 (MQ=255)                                             gttgttGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCACCCAggtgtatgaccaccagctgatggaagc                                                                                                                           <  7:336879‑M2/131‑28 (MQ=255)                                                   gCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTg                                                                                                   >  1:27897/1‑149 (MQ=255)                                                             gcgcCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAg                                                                                          <  2:27897/148‑1 (MQ=255)                                                                ccGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGgctg                                                                                                                           >  2:13771/1‑112 (MQ=255)                                                                ccGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGgctg                                                                                                                           <  1:13771/112‑1 (MQ=255)                                                                ccGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTc                                                                                       >  3:346779/1‑148 (MQ=255)                                                                 cGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCGATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGa                                                                                     >  7:149475/1‑149 (MQ=255)                                                                 cGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGa                                                                                     <  5:317298/149‑1 (MQ=255)                                                                       gCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCaa                                                                               >  7:323694/1‑149 (MQ=255)                                                                        ccGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAAc                                                                              <  8:323694/149‑1 (MQ=255)                                                                        ccGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAAc                                                                              >  2:20202/1‑149 (MQ=255)                                                                          ggTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCTACTTCAACCa                                                                            >  1:256985/1‑149 (MQ=255)                                                                                gcTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCg                                                                                                             <  8:297420/110‑1 (MQ=255)                                                                                gcTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCg                                                                                                             >  7:297420/1‑110 (MQ=255)                                                                                gcTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTg                                                                       >  6:304434/1‑148 (MQ=255)                                                                                 cTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGa                                                                     <  3:136636/149‑1 (MQ=255)                                                                                         gTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGc                                                                <  4:329753/146‑1 (MQ=255)                                                                                         gTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGa                                                             >  6:54530/1‑149 (MQ=255)                                                                                                 gCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGGCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTg                                                                                                   >  4:291523/1‑103 (MQ=255)                                                                                                 gCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGc                                                                                                                     >  3:224744/1‑85 (MQ=255)                                                                                                             ggTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCtt                                          >  5:26158/1‑148 (MQ=255)                                                                                                              gTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGa                                        <  5:304434/149‑1 (MQ=255)                                                                                                                           aTCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCAGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCt                           <  8:149475/149‑1 (MQ=255)                                                                                                                            tCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCt                           >  2:195146/1‑148 (MQ=255)                                                                                                                                     ggtCATACACCTGGGTggtgtatgaccaccagctgatggaagc                                                                                                                           <  3:110176‑M2/43‑28 (MQ=255)                                                                                                                                     ggtCATACACCTGGGTggtgtatgaccaccagctgatggaagc                                                                                                                           >  4:110176‑M2/1‑16 (MQ=255)                                                                                                                                      gtCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGGCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACATGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATg                 <  4:346779/148‑1 (MQ=255)                                                                                                                                         aTACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATGCGCa             >  6:349862/1‑149 (MQ=255)                                                                                                                                             acCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTcc                                            >  7:321610/1‑114 (MQ=255)                                                                                                                                             acCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTcc                                            <  8:321610/114‑1 (MQ=255)                                                                                                                                             acCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATGCGCACggg         <  1:20202/149‑1 (MQ=255)                                                                                                                                               cTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATGCGCACGGGTa       >  6:61240/1‑149 (MQ=255)                                                                                                                                                tGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATGCGCACGGGTAc      >  4:31422/1‑149 (MQ=255)                                                                                                                                                   gtggtgTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATGCGCACGGGTACTCg   <  5:54530/149‑1 (MQ=255)                                                                                                                                                   gtggtgTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATGCGCACGGGTACTCg   >  2:225089/1‑149 (MQ=255)                                                                                                                                                    tggtgTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATGCGCACGGGTACTCGc  <  3:31422/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     ATGGTGGTCAGCAGCAGACTCGGCGGCGTGAACTGGGCAGCGGCGTTGTTGCTCATCGTTGCGCCGTCTTGCCGGTTGCGCTGTTCTCGTGAATCAGCCGGGCGATCAGGTTGTCGGCTTCCATCAGCTGGTGGTCATACACCTGGGTGGTGTAGCTGGCCTTCTGCGGTGGCTGCTGGGCCAGGGTCGGGCCGCTCTGGTCATGCAGGTCGACTTCAACCACGGTGGACAGGCCGATACGTAGCGGGTGGTCCTTGAGCTGGTCGGGGCTGAGGTGGATGCGCACGGGTACTCGC  >  NC_002947/4024453‑4024748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.