New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4124867 =	46 (0.830)	3 (0.060)	3/242	NT	6.6%	coding (1342/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein
	?	NC_002947	4124918 =	41 (0.780)					coding (1393/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein

TGCCTCGCCAGGGTTACCTGGGTCGCCGATCGCCAGCATGATGGCCGCCACCGTACCGGTCAGCGTCCCCCAGAAAATCACTGTGCGTCGCGATGGCGCGGTGGTGCCGTGTTCCGACAGCGTGCCCATCACCAGCGAGGCGGCGTCGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4125019‑4124867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaccACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTGACCATCGTCGTGGCCTTGCCA  >  NC_002947/4124918‑4125061                                                                                                                                                                                                                                                                                                           TGCCTCGCCAGGGTTACCTGGGTCGCCGATCGCCAGCATGATGGCCGCCACCGTACCGGTCAGCGTCCCCCAGAAAATCACTGTGCGTCGCGATGGCGCGGTGGTGCCGTGTTCCGACAGCGTGCCCATCACCAGCGAGGCGGCGTCGG                                                                                                                                                      <  5:12549/149‑1   CCTCGCCAGGGTTACCTGGGTCGCCGATCGCCAGCATGATGGCCGCCACCGTACCGGTCAGCGTCCCCCAGAAAATCACTGTGCGTCGCGATGGCGCGGTGGTGCCGTGTTCCGACAGCGTGCCCATCACCAGCGAGGCGGCGTCGGCA                                                                                                                                                    >  4:167967/1‑149    CTCGCCAGGGTTACCTGGGTCGCCGATCGCCAGCATGATGGCCGCCACCGTACCGGTCAGCGTCCCCCAGAAAATCACTGTGCGTCGCGATGGCGCGGTGGTGCCGTGTTCCGACAGCGTGCCCATCACCAGCGAGGCGGCGTCGGCAC                                                                                                                                                   >  4:264944/1‑149    CTCGCCAGGGTTACCTGGGTCGCCGATCGCCAGCATGATGGCCGCCACCGTACCGGTCAGCGTCCCCCAGAAAATCACTGTGCGTCGCGATGGCGCGGTGGTGCCGTGTTCCGACAGCGTGCCCATCACCAGCGAGGCGGCGTCGGCAC                                                                                                                                                   >  5:149906/1‑149                                                                                                     GTGGTGCCGTGTTCCGACAGCGTGCCCATCACCAGCGAGGCGGCGTCGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCA                                                                                     >  3:19300/1‑114                                                                                                     GTGGTGCCGTGTTCCGACAGCGTGCCCATCACCAGCGAGGCGGCGTCGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCA                                                                                     <  4:19300/114‑1                                                                                                      TGGTGCCGTGTTCCGACAGCGTGCCCATCACCAGCGAGGCGGCGTCGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCG                                                 >  1:160682/1‑149                                                                                                                                                     GCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTGACCATCGTCGTGGCCTTGCCA  >  1:67097/1‑149                                                                                                                                                                                                                                                                                                           TGCCTCGCCAGGGTTACCTGGGTCGCCGATCGCCAGCATGATGGCCGCCACCGTACCGGTCAGCGTCCCCCAGAAAATCACTGTGCGTCGCGATGGCGCGGTGGTGCCGTGTTCCGACAGCGTGCCCATCACCAGCGAGGCGGCGTCGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4125019‑4124867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaccACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTGACCATCGTCGTGGCCTTGCCA  >  NC_002947/4124918‑4125061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.