New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4124867 =	46 (0.830)	3 (0.060)	3/242	NT	6.6%	coding (1342/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein
	?	NC_002947	4124918 =	41 (0.780)					coding (1393/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein

CATCGAGGCCGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCT  >  NC_002947/4124719‑4125010                                                                                                                                                     |                                                                                                                                                cATCGAGGCCGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCgg                                                                                                                                                 <  6:356287/149‑1 (MQ=255)   tCGAGGCCGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGt                                                                                                                                               <  5:271375/149‑1 (MQ=255)     tggcaaggccacgacgatggtcaggttctgcagcccggtcagtgcctcgccagggttacctgggtcgccgatcgccagcatgatggccgccaccgtaccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGc                                                                                                                                             >  1:67097‑M1/145‑149 (MQ=255)          cGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGAcg                                                                                                                                        >  7:1610/1‑149 (MQ=255)          cGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGAcg                                                                                                                                        >  5:91898/1‑149 (MQ=255)          cGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGAcg                                                                                                                                        >  5:86881/1‑149 (MQ=255)                   gggCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGc                                                                                                                               <  5:243189/149‑1 (MQ=255)                             cAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATgg                                                                                                                      <  8:1610/148‑1 (MQ=255)                                     cAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCTGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATg                                                                                                                       <  2:272135/139‑1 (MQ=255)                                     cAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATg                                                                                                                       >  1:272135/1‑139 (MQ=255)                                     cAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGcag                                                                                                              >  4:194463/1‑146 (MQ=255)                                                tCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGTTCCTGGTGGGCATCTTTTTTGTTTCgg                                                                                                                                                 <  1:191664/102‑1 (MQ=255)                                                tCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCgg                                                                                                                                                 >  2:191664/1‑102 (MQ=255)                                                  aaCAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGa                                                                                                                         >  8:280681/1‑124 (MQ=255)                                                  aaCAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGa                                                                                                                         <  7:280681/124‑1 (MQ=255)                                                    cgccagggttacctgggtcgccgatcgccagcatgatggccgccaccgtaccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcacca                                                                                              >  1:160682‑M1/98‑149 (MQ=255)                                                     aGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcaccac                                                                                             >  7:298949/1‑149 (MQ=255)                                                            aCGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACgccgcc                                                                                                                                   >  2:288326/1‑104 (MQ=255)                                                                    tACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGAc                                                                               <  8:298949/148‑1 (MQ=255)                                                                      ccAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGca                                                                            >  7:334303/1‑149 (MQ=255)                                                                           tGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGTTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACgg                                                                                                   >  6:217172/1‑121 (MQ=255)                                                                           tGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGTTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACgg                                                                                                   <  5:217172/121‑1 (MQ=255)                                                                              tGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATg                                                                                                                       <  4:184433/98‑1 (MQ=255)                                                                              tGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGAtt                                                                    >  4:277673/1‑149 (MQ=255)                                                                               ggACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGAt                                                                                                                        >  3:328154/1‑96 (MQ=255)                                                                                  cAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCt                                                                <  6:91898/149‑1 (MQ=255)                                                                                  cAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCt                                                                <  6:86881/149‑1 (MQ=255)                                                                                   aGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGTTGATGCTGGTGGGAATCTTTTTTGTTTCTGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACAAGGCACCACAGCGCCATCGCGACTCCAAGAGATTTTATg                                                               >  8:273273/1‑149 (MQ=255)                                                                                      tACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTgggg                                                            >  5:37741/1‑149 (MQ=255)                                                                                        tggccgccaccgtaccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcaccac                                                                                             >  3:19300‑M1/62‑114 (MQ=255)                                                                                        tggccgccaccgtaccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcaccac                                                                                             <  4:19300‑M1/53‑1 (MQ=255)                                                                                           tcTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGc                                                       >  3:167967/2‑149 (MQ=255)                                                                                                ccTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTg                                                                                                                             >  4:66826/1‑74 (MQ=255)                                                                                                ccTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTg                                                                                                                             <  3:66826/74‑1 (MQ=255)                                                                                                 cTCGGCAACCTCGGGGCTGGTGCTTAGCCTGGTGGGCATCTTTTTTGTTTCTGGTGCCGACGCCTCCTCGCTGGTGATGGGAACGCTGTCTGACCACGGCACCACAGAGCCATCGCGACGCAAAGTGATTTGCTGGGGGACGCTGACCg                                                 >  7:25649/1‑149 (MQ=255)                                                                                                  tCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTc                                                                 <  4:214442/132‑1 (MQ=255)                                                                                                  tCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTc                                                                 >  3:214442/1‑132 (MQ=255)                                                                                                   cGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTgg                                                              >  2:333965/1‑134 (MQ=255)                                                                                                   cGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTgg                                                              <  1:333965/134‑1 (MQ=255)                                                                                                             ggTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTggcg                                      <  8:334303/148‑1 (MQ=255)                                                                                                                    gTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCcatc                                <  6:37741/147‑1 (MQ=255)                                                                                                                      gatgatCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGc                            >  1:136745/1‑149 (MQ=255)                                                                                                                             cTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGAt                     >  1:44917/1‑149 (MQ=255)                                                                                                                              tggtggGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATc                    >  3:241837/1‑149 (MQ=255)                                                                                                                                gtggGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCgg                  <  2:44917/149‑1 (MQ=255)                                                                                                                                    gCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGt                                               <  2:172511/116‑1 (MQ=255)                                                                                                                                    gCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGt                                               >  1:172511/1‑116 (MQ=255)                                                                                                                                     cATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTggcg                                      >  3:349868/1‑124 (MQ=255)                                                                                                                                     cATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTggcg                                      <  4:349868/124‑1 (MQ=255)                                                                                                                                     cATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGAcc             >  1:38006/1‑149 (MQ=255)                                                                                                                                           ttttGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGTGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAg          <  3:194463/146‑1 (MQ=255)                                                                                                                                           ttttGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGt        >  3:264944/1‑148 (MQ=255)                                                                                                                                           ttttGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGt        >  6:149906/1‑148 (MQ=255)                                                                                                                                               gTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAGccc   >  1:256141/1‑149 (MQ=255)                                                                                                                                                tttCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCt  >  7:167718/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                CATCGAGGCCGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCT  >  NC_002947/4124719‑4125010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.