New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4401180	53 (0.960)	3 (0.060)	3/242	NT	5.5%	coding (169/189 nt)	PP_3880	hypothetical protein
	?	NC_002947	= 4401221	54 (1.030)					coding (128/189 nt)	PP_3880	hypothetical protein

CTAGACCCTACCCCGCGCCGCCAAAAACTACTGCCGCCATCCGAAACCAGCCCTTCATTGCCGCCAAGAAGATTGCTGAAGAACATAATCAGCCTCCTTCTGGGCTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4401072‑4401180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgggCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCAAACCCAGCCCAGAAGGAGGCTGATTATGTTCTTCAGCAATCTTCTTGGCGGCAATGAAGGGCTGGTTTCGGATGGCGGCAGTAGTTTTTGGCGGCGCGGGGTAGGGTC  <  NC_002947/4401221‑4401075                                                                                                                                                                                                                                                                  CTAGACCCTACCCCGCGCCGCCAAAAACTACTGCCGCCATCCGAAACCAGCCCTTCATTGCCGCCAAGAAGATTGCTGAAGAACATAATCAGCCTCCTTCTGGGCTGGGCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCA                                                                                                              >  7:199558/1‑148    gcCCCTACCCCGCGCCGCCAAAAACTACTGCCGCCATCCGAAACCAGCCCTTCATTGCCGCCAAGAAGATTGCTGAAGAACATAATCAGCCTCCTTCTGGGCTGGGCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCAAA                                                                                                            <  8:199558/145‑1       CCTACCCCGCGCCGCCAAAAACTACTGCCGCCATCCGAAACCAGCCCTTCATTGCCGCCAAGAAGATTGCTGAAGAACATAATCAGCCTCCTTCTGGGCTGGG                                                                                                                                                     <  5:14213/103‑1       CCTACCCCGCGCCGCCAAAAACTACTGCCGCCATCCGAAACCAGCCCTTCATTGCCGCCAAGAAGATTGCTGAAGAACATAATCAGCCTCCTTCTGGGCTGGG                                                                                                                                                     >  6:14213/1‑103           CCCCGCGCCGCCAAAAACTACTGCCGCCATCCGAAACCAGCCCTTCATTGCCGCCAAGAAGATTGCTGAAGAACATAATCAGCCTCCTTCTGGGCTGGGCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCAAACCCAGCCC                                                                                                    <  3:155180/148‑1                                                                                                       GGCTGGGCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCAAACCCAGCCCAGAAGGAGGCTGATTATGTTCTTCAGCAATCTTCTTGGCGGCAATGAAGGGCTGGTTTCGGATGGCGGCAGTAGTTTTTGGCGGCGCGGGGTA       <  3:184315/149‑1                                                                                                        GCTGGGCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCAAACCCAGCCCAGAAGGAGGCTGATTATGTTCTTCAGCAATCTTCTTGGCGGCAATGAAGGGCTGGTTTCGGATGGCGGCAGTAGTTTTTGGCGGCGCGG           >  5:148579/1‑144                                                                                                        GCTGGGCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCAAACCCAGCCCAGAAGGAGGCTGATTATGTTCTTCAGCAATCTTCTTGGCGGCAATGAAGGGCTGGTTTCGGATGGCGGCAGTAGTTTTTGGCGGCGCGG           <  6:148579/144‑1                                                                                                         CTGGGCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCAAACCCAGCCCAGAAGGAGGCTGATTATGTTCTTCAGCAATCTTCTTGGCGGCAATGAAGGGCTGGTTTCGGATGGCGGCAGTAGTTTTTGGCGGCGCGGGGTAGG     >  3:32887/1‑149                                                                                                             GCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCAAACCCAGCCCAGAAGGAGGCTGATTATGTTCTTCAGCAATCTTCTTGGCGGCAATGAAGGGCTGGTTTCGGATGGCGGCAGTAGTTTTTGGCGGCGCGGGGTAGGGTC  >  4:336946/1‑148                                                                                                                                                                                                                                                                  CTAGACCCTACCCCGCGCCGCCAAAAACTACTGCCGCCATCCGAAACCAGCCCTTCATTGCCGCCAAGAAGATTGCTGAAGAACATAATCAGCCTCCTTCTGGGCTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4401072‑4401180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgggCTTGGCTGGCCGACAAAGCCGCAGCCCGAGTACCTCTCAAACCCAGCCCAGAAGGAGGCTGATTATGTTCTTCAGCAATCTTCTTGGCGGCAATGAAGGGCTGGTTTCGGATGGCGGCAGTAGTTTTTGGCGGCGCGGGGTAGGGTC  <  NC_002947/4401221‑4401075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.