New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4421693 =	38 (0.690)	4 (0.080)	4/240	NT	10.6%	coding (1443/1662 nt)	PP_3912	DNA‑cytosine methyltransferase
	?	NC_002947	4421750 =	32 (0.620)					coding (1500/1662 nt)	PP_3912	DNA‑cytosine methyltransferase

CTGTTGCCGATCGCCTTGTAGCGCGGCCCGTCAGGGCATTCGTCTGCAGGCTTGCCGCGATAGGGGATGCGGGTGTGGTCGCCGGGAAAGCCCTGGAGCCATTCGCACTCCCGTGGAGTGAGGCGGCGCACCTGCGCATTGGTCTGAATGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4421845‑4421693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatggctCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCGGCAACAGCAAGGCCGTGTTCGTCGTCCGCTGGATCGGCCGGCGCATCCAACAACAACTT  >  NC_002947/4421750‑4421897                                                                                                                                                                                                                                                                                                               CTGTTGCCGATCGCCTTGTAGCGCGGCCCGTCAGGGCATTCGTCTGCAGGCTTGCCGCGATAGGGGATGCGGGTGTGGTCGCCGGGAAAGCCCTGGAGCCATTCGCACTCCCGTGGAGTGAGGCGGCGCACCTGCGCATTGGTCTGAA                                                                                                                                                           <  2:281906/148‑1  TGTTGCCGATCGCCTTGTAGCGCGGCCCGTCAGGGCATTCGTCAGCAGGCTTGCCGCGATAGGGGATGCGGGTGTGGTCGCCGGGAAAGCCCTGGAGCCATTCGCACTCCCGTGGAGTGAGGCGGCGCACCTGCGCATTGGTCTGAATG                                                                                                                                                         >  1:250258/1‑149     TGCCGATCGCCTTGTAGCGCGGCCCGTCAGGGCATTCGTCTGCAGGCTTGCCGCGATAGGGGATGCGGGTGTGGTCGCCGGGAAAGCCCTGGAGCCATTCGCACTCCCGTGGAGTGAGGCGGCGCACCTGCGCATTGGTCTGAATGGCT                                                                                                                                                      >  4:269392/1‑149                                                                                            CCTGGAGCCATTCGCACTCCCGTGGAGTGAGGCGGCGCACCTGCGCATTGGTCTGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGAT                                                               >  4:69941/1‑149                                                                                                 AGCCATTCGCACTCCCGTGGAGTGAGGCGGCGCACCTGCGCATTGGTCTGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGG                                                                   >  7:267239/1‑140                                                                                                 AGCCATTCGCACTCCCGTGGAGTGAGGCGGCGCACCTGCGCATTGGTCTGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGG                                                                   <  8:267239/140‑1                                                                                                                           GCGGCGCACCTGCGCATTGGTCTGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCGGCAACAGCAAGGCCGTGTTCGTCGTCCGC                                <  3:69941/149‑1                                                                                                                                                       GCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCTCGCTACAAGGCGATCGGCAACAGCAAGGCCGTGTTCGTCGTCCGCTTTATCGGCCGGCGCATCCAACAACAAC    <  5:213889/149‑1                                                                                                                                                       GCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCGGCAACAGCAAGGCCGTGTTCGTCGTCCGCTGGATCGGCCGGCGCATCCAACAACAAC    >  1:128231/1‑149                                                                                                                                                         TCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCGGCAACAGCAAGGCCGTGTTCGTCGTCCGCTGGATCGGCCGGCGCATCCAACAACAACTT  >  2:155762/1‑149                                                                                                                                                                                                                                                                                                               CTGTTGCCGATCGCCTTGTAGCGCGGCCCGTCAGGGCATTCGTCTGCAGGCTTGCCGCGATAGGGGATGCGGGTGTGGTCGCCGGGAAAGCCCTGGAGCCATTCGCACTCCCGTGGAGTGAGGCGGCGCACCTGCGCATTGGTCTGAATGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4421845‑4421693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatggctCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCGGCAACAGCAAGGCCGTGTTCGTCGTCCGCTGGATCGGCCGGCGCATCCAACAACAACTT  >  NC_002947/4421750‑4421897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.