New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4421693 =	38 (0.690)	4 (0.080)	4/240	NT	10.6%	coding (1443/1662 nt)	PP_3912	DNA‑cytosine methyltransferase
	?	NC_002947	4421750 =	32 (0.620)					coding (1500/1662 nt)	PP_3912	DNA‑cytosine methyltransferase

CCAGCGAAGACGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCGGCA  >  NC_002947/4421545‑4421841                                                                                                                                                     |                                                                                                                                                     ccAGCGAAGACGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCGGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCaa                                                                                                                                                      <  3:265507/149‑1 (MQ=255) ccAGCGAAGACGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGGTCACGCATACACATTGGAAGCACGGGCAGAAGTCCaa                                                                                                                                                      <  8:276037/149‑1 (MQ=255) aagttgttgttggatgcgccggccgatccagcggacgacgaacacggccttgctgttgccgatcgccttgtagcgcggcccgtcagggcattcgtctgcaggcttgccgcgataggggatgcgggtgtggtcgccgggaaagccctgga                                                                                                                                                      >  2:155762‑M1/149‑149 (MQ=255)  cAGCGAAGACGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCaa                                                                                                                                                      <  3:145644/148‑1 (MQ=255)   gttgttgttggatgcgccggccgatccagcggacgacgaacacggccttgctgttgccgatcgccttgtagcgcggcccgtcagggcattcgtctgcaggcttgccgcgataggggatgcgggtgtggtcgccgggaaagccctggAGc                                                                                                                                                    >  1:128231‑M1/147‑149 (MQ=255)   gttgttgttggatgcgccggccgataaagcggacgacgaacacggccttgctgttgccgatcgccttgtagcgaggcccgtcagggcattcgtctgcaggcttgccgcgataggggatgcgggtgtggtcgccgggaaagccctggAGc                                                                                                                                                    <  5:213889‑M1/3‑1 (MQ=255)       aaGACGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCAtt                                                                                                                                                >  1:318875/1‑149 (MQ=255)        aGACGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCAtt                                                                                                                                                <  2:318875/148‑1 (MQ=255)         gACGGCACTGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCATGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACTGGCAGAAGTCCAAGCCATTCa                                                                                                                                              <  7:114954/149‑1 (MQ=255)          aCGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAg                                                                                                                                             <  5:309415/149‑1 (MQ=255)          aCGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGACGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATCGCGTTGGTGTGAAGGCCGATCACGCATACACATTGGAAGCACGGGCACAAGTCAAAGCCAtt                                                                                                                                                >  8:334623/1‑146 (MQ=255)           cGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGa                                                                                                                                            <  4:17996/149‑1 (MQ=255)           cGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGa                                                                                                                                            >  3:307227/1‑149 (MQ=255)            ggCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGAc                                                                                                                                           <  3:243408/149‑1 (MQ=255)               aCGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCaa                                                                                                                                        <  8:271132/149‑1 (MQ=255)                            aGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAg                                                                                                                                                     >  7:79177/1‑123 (MQ=255)                            aGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAg                                                                                                                                                     <  8:79177/123‑1 (MQ=255)                            aGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTgcgc                                                                                                                           <  4:307227/149‑1 (MQ=255)                            aGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCAATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTgcgc                                                                                                                           >  7:36110/1‑149 (MQ=255)                               gcggacgacgaacacggccttgctgttgccgatcgccttgtagcgcggcccgtcagggcattcgtctgcaggcttgccgcgataggggatgcgggtgtggtcgccgggaaagccctggAGCCATTCAGACCAATGCGCAGGTGcgccgc                                                                                                                        <  3:69941‑M1/31‑1 (MQ=255)                                           aCGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGAGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACgg                                                                                                            >  1:109927/1‑149 (MQ=255)                                             gCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACgg                                                                                                            >  1:324589/1‑147 (MQ=255)                                                    aGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGaa                                                                                                   >  2:57720/1‑149 (MQ=255)                                                     ggCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAAt                                                                                                  <  1:57720/149‑1 (MQ=255)                                                              atcgccttgtagcgcggcccgtcagggcattcgtctgcaggcttgccgcgataggggatgcgggtgtggtcgccgggaaagccctggAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAgg                                                                                         >  4:69941‑M1/88‑149 (MQ=255)                                                                 gcgcGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTc                                                                                                                     <  4:288218/118‑1 (MQ=255)                                                                 gcgcGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTc                                                                                                                     >  3:288218/1‑118 (MQ=255)                                                                 gcgcGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCt                                                                                      >  3:152481/1‑149 (MQ=255)                                                                  ccttgtagcgcggcccgtcagggcattcgtctgcaggcttgccgcgataggggatgcgggtgtggtcgccgggaaagccctggAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCt                                                                                              <  8:267239‑M1/57‑1 (MQ=255)                                                                  ccttgtagcgcggcccgtcagggcattcgtctgcaggcttgccgcgataggggatgcgggtgtggtcgccgggaaagccctggAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCt                                                                                              >  7:267239‑M1/84‑140 (MQ=255)                                                                    cgAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTc                                                                                   >  6:84394/1‑149 (MQ=255)                                                                     gAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCAATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTcc                                                                                  <  8:36110/149‑1 (MQ=255)                                                                         aCCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGc                                                                              <  7:279875/149‑1 (MQ=255)                                                                           ccAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGa                                                                            >  1:110386/1‑149 (MQ=255)                                                                           ccAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGa                                                                            >  6:201310/1‑149 (MQ=255)                                                                            cAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGAc                                                                           <  4:152481/149‑1 (MQ=255)                                                                                               cGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATc                                                        <  5:84394/149‑1 (MQ=255)                                                                                                gTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACgg                                                                                                            >  6:354852/1‑96 (MQ=255)                                                                                                gTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACgg                                                                                                            <  5:354852/96‑1 (MQ=255)                                                                                                gTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATcg                                                       >  5:85972/1‑149 (MQ=255)                                                                                                         cAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGcc                                              >  6:86076/1‑149 (MQ=255)                                                                                                           ggCCGATCACGCATACACATTGGAAGCACGGGCAGCAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCCCGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTg                                            >  2:250258/1‑149 (MQ=255)                                                                                                           ggCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTg                                            <  2:324589/149‑1 (MQ=255)                                                                                                                 tCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGAc                                       >  7:211265/1‑148 (MQ=255)                                                                                                                                 gAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGcc                      >  5:294584/1‑149 (MQ=255)                                                                                                                                    gCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCcgcg                   <  7:334623/149‑1 (MQ=255)                                                                                                                                      aCGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCgcgc                  >  3:269392/1‑148 (MQ=255)                                                                                                                                      aCGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCt                 <  5:86076/149‑1 (MQ=255)                                                                                                                                           cAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAg            <  6:294584/149‑1 (MQ=255)                                                                                                                                             gAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGc          <  2:110386/149‑1 (MQ=255)                                                                                                                                                gTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTACAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACatcgc          >  1:181033/1‑142 (MQ=255)                                                                                                                                                   cAAGCCATTCAGACCAATGCGCAGGTGCGCCGACTCACTCCACGGTAGTCCGAATGGCTCCACGGCTATCCCGGCGACCACACCCGCATCCACTATCGCGGCAAGCCTACAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCgg    >  1:118631/1‑149 (MQ=255)                                                                                                                                                    aaGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCgg    >  5:352064/1‑148 (MQ=255)                                                                                                                                                    aaGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCgg    >  5:120103/1‑148 (MQ=255)                                                                                                                                                     AGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCGGCa  >  4:269392‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCAGCGAAGACGGCACGGGCCGTGGGCAGCCAATCGTTGCTCACGCCATCCAGGCCGGCGCTCTGCGCGAAAACCCAGCGAGCGGTCCAGATGGCGTTGGTGTGCAGGCCGATCACGCATACACATTGGAAGCACGGGCAGAAGTCCAAGCCATTCAGACCAATGCGCAGGTGCGCCGCCTCACTCCACGGGAGTGCGAATGGCTCCAGGGCTTTCCCGGCGACCACACCCGCATCCCCTATCGCGGCAAGCCTGCAGACGAATGCCCTGACGGGCCGCGCTACAAGGCGATCGGCA  >  NC_002947/4421545‑4421841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.