New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4466973	36 (0.650)	3 (0.060)	3/246	NT	7.4%	coding (716/1362 nt)	nhaA‑II	Na(+)/H(+) antiporter NhaA
	?	NC_002947	= 4466996	40 (0.750)					coding (739/1362 nt)	nhaA‑II	Na(+)/H(+) antiporter NhaA

GCAGTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTGTTGACCGGCGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4466858‑4466973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaGCACGACGCCTGCGAGGGTCGGGTGGGCGCCGGTCAACAAGATGCCCAGCCAGACGATCGCACCGGGAATGACATAGGCGTAGGCTGAACCCACTCCGATCTTCTGAAGCCCGATCACCATTAGCAGGCCGATCACTGCAACGCCGAA  <  NC_002947/4466996‑4466849                                                                                                                                                                                                                                                                          GCAGTGATCGGCCTGCTATTGGCGATCGGGCGTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTGTTGACCGGCGCCCAGCACGACGCCTGCGAGGGTCGGGTGGGCGCCG                                                                                                                      <  4:245268/148‑1    GTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTGTTGACCGGCGCCCAGCACGACGCCTGCGAGGGTCGGGTGGGCGCCGGTC                                                                                                                   <  7:263371/148‑1    GTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTGTTGACCGGCGCCCAGCACGACGCCTGCGAGGGTCGGGTGGGCGCCGGTC                                                                                                                   >  8:263371/1‑148                                                                                                                GCCCAGCACGACGCCTGCGAGGGTCGGGTGGGCGCCGGTCAACAAGATGCCCAGCCAGACGATCGCACCGGGAATGACATAGGCGTAGGCTGAACCCACTCCGATCTTCTGAAGCCCGATCACCATTAGCAGGCCGATCACTGCAACGC      >  8:279298/1‑149                                                                                                                    AGCACGACGCCTGCGAGGGTCGGGTGGGCGCCGGTCAACAAGATGCCCAGCCAGACGATCGCACCGGGAATGACATAGGCGTAGGCTGAACCCACTCCGATCTTCTGAAGCCCGATCACCATTAGCAGGCCGATCACTGCAACGCCGAA  <  3:172740/149‑1                                                                                                                                                                                                                                                                          GCAGTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTGTTGACCGGCGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4466858‑4466973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaGCACGACGCCTGCGAGGGTCGGGTGGGCGCCGGTCAACAAGATGCCCAGCCAGACGATCGCACCGGGAATGACATAGGCGTAGGCTGAACCCACTCCGATCTTCTGAAGCCCGATCACCATTAGCAGGCCGATCACTGCAACGCCGAA  <  NC_002947/4466996‑4466849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.