New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4466973	36 (0.650)	3 (0.060)	3/246	NT	7.4%	coding (716/1362 nt)	nhaA‑II	Na(+)/H(+) antiporter NhaA
	?	NC_002947	= 4466996	40 (0.750)					coding (739/1362 nt)	nhaA‑II	Na(+)/H(+) antiporter NhaA

TTCGGCGTTGCAGTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCTCATGGACCCGTTGAAACGACTGCGCC  >  NC_002947/4466849‑4467143                                                                                                                                                     |                                                                                                                                                    ttCGGCGTTGCAGTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCt                                                                                                                                                    <  3:172740‑M2/149‑2 (MQ=255)     gCGTTGCAGTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCtgggc                                                                                                                                                >  8:279298‑M2/1‑144 (MQ=255)           cAGTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCtgatg                                                                                                                                          <  3:98990/149‑1 (MQ=255)            aGTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCtgatga                                                                                                                                         <  4:172740/149‑1 (MQ=255)                aTCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTGCTTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGaca                                                                                                                                       <  1:89386/148‑1 (MQ=255)                         cTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACGGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCAcct                                                                                                                             <  6:55900/148‑2 (MQ=255)                           aaTGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGacac                                                                                                                                      <  4:215685/137‑1 (MQ=255)                           aaTGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGacac                                                                                                                                      >  3:215685/1‑137 (MQ=255)                            aTGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAAt                                                                                                                         >  5:302489/1‑149 (MQ=255)                                 gATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGa                                                                                                                    >  5:218294/1‑149 (MQ=255)                                                gaTCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCAc                                                                                                     >  1:248833/1‑149 (MQ=255)                                                   cGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTg                                                                                                   >  7:310026/1‑148 (MQ=255)                                                     gAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGAc                                                                                                >  1:317217/1‑149 (MQ=255)                                                     gAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGAc                                                                                                <  2:248833/149‑1 (MQ=255)                                                          ggTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCAt                                                                                           >  3:320731/1‑149 (MQ=255)                                                            ttCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGacac                                                                                                                                      >  6:161041/1‑104 (MQ=255)                                                            ttCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGacac                                                                                                                                      <  5:161041/104‑1 (MQ=255)                                                                 ccTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGGTGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGc                                                                                    >  5:100998/1‑149 (MQ=255)                                                                             tCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTAcc                                                                                       <  3:300528/134‑1 (MQ=255)                                                                             tCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCAACTGGACGCCATTAcc                                                                                       >  4:300528/1‑134 (MQ=255)                                                                               aTTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAAtt                                                                      <  6:218294/149‑1 (MQ=255)                                                                                 tCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGc                                                                    >  8:282596/1‑149 (MQ=255)                                                                                   ccGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCt                                                                   <  5:235206/148‑1 (MQ=255)                                                                                    cGGTGCGATCGTCTGGCTGGGCATCGTG‑TTGACCGGCGGCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTgg                                                                 <  3:125828/149‑1 (MQ=255)                                                                                            tCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCGGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGgcgcgc                                                          >  2:264329/1‑148 (MQ=255)                                                                                                   gctggGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCg                                                                                     >  7:294633/1‑114 (MQ=255)                                                                                                   gctggGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCg                                                                                     <  8:294633/114‑1 (MQ=255)                                                                                                     tggGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCt                                                >  8:125087/1‑149 (MQ=255)                                                                                                       ggCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGa                                              <  3:178574/149‑1 (MQ=255)                                                                                                          aTCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGc                                            >  3:111692/1‑148 (MQ=255)                                                                                                               g‑ttgACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGGTGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGGCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAg                                         <  6:100998/146‑1 (MQ=255)                                                                                                               g‑ttgACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCTCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGAt                                       <  4:320731/148‑1 (MQ=255)                                                                                                                   gACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCtgggcgccggtcaacaagatgcccagccagacgatcgcaccgggaatgacataggcgtaggctgaacccactccgatcttctgaagcccgatcaccattagcaggccgatcac                                    <  7:263371‑M2/148‑114 (MQ=255)                                                                                                                   gACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCtgggcgccggtcaacaagatgcccagccagacgatcgcaccgggaatgacataggcgtaggctgaacccactccgatcttctgaagcccgatcaccattagcaggccgatcac                                    >  8:263371‑M2/1‑35 (MQ=255)                                                                                                                      cGGCGCCCACCCGACCCTCGCAGGCGTCGTGCtgggcgccggtcaacaagatgcccagccagacgatcgcaccgggaatgacataggcgtaggctgaacccactccgatcttctgacgcccgatcgccaatagcaggccgatcactgc                                 <  4:245268‑M2/148‑117 (MQ=255)                                                                                                                       ggCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGa                               <  8:310026/149‑1 (MQ=255)                                                                                                                          gcCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGa                                              >  6:134163/1‑131 (MQ=255)                                                                                                                          gcCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGa                                              <  5:134163/131‑1 (MQ=255)                                                                                                                          gcCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCt                            >  2:229006/1‑149 (MQ=255)                                                                                                                            ccACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCTCa                          >  5:82373/1‑149 (MQ=255)                                                                                                                            ccACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCTCa                          >  1:139890/1‑149 (MQ=255)                                                                                                                             cACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCTCAt                         <  6:302489/149‑1 (MQ=255)                                                                                                                                ccGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCTCATGGa                      >  1:337654/1‑149 (MQ=255)                                                                                                                                      cTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCTCATGGACCCGtt                <  7:282596/149‑1 (MQ=255)                                                                                                                                              cgtcgtGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCTCATGGACCCGTTGAAACGAc        >  7:184840/1‑149 (MQ=255)                                                                                                                                                     cTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCTCATGTACCCGTTGAAACGACTGCGcc  <  2:337654/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TTCGGCGTTGCAGTGATCGGCCTGCTAATGGTGATCGGGCTTCAGAAGATCGGAGTGGGTTCAGCCTACGCCTATGTCATTCCCGGTGCGATCGTCTGGCTGGGCATCTTG‑TTGACCGGCGCCCACCCGACCCTCGCAGGCGTCGTGCTGGGCCTGATGACACCTGTCACCGCAATGCCGATGCGTGAGCGCCCACTGGACGCCATTACCCGCTTCACCGGCGAATTGCTGGGGCGCGCCAAAGCGCCTGAGCAAGATGCCAGCGACCTCATGGACCCGTTGAAACGACTGCGCC  >  NC_002947/4466849‑4467143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.